Variant report

Variant	rs1155057
Chromosome Location	chr4:85138780-85138781
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11933199	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008223	0.90[EUR][1000 genomes]
rs17008332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008689	0.90[EUR][1000 genomes]
rs17008692	0.90[EUR][1000 genomes]
rs60920285	1.00[EUR][1000 genomes]
rs6812243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812277	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823550	0.87[AMR][1000 genomes]
rs6855119	1.00[EUR][1000 genomes]
rs72961933	0.90[EUR][1000 genomes]
rs73831427	1.00[EUR][1000 genomes]
rs9992688	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85138600-85138800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:85138600-85139600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:85138600-85139800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:85138600-85142200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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