Variant report

Variant	rs6823550
Chromosome Location	chr4:85140083-85140084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1155057	0.87[AMR][1000 genomes]
rs11933199	0.87[AMR][1000 genomes]
rs17008332	0.87[AMR][1000 genomes]
rs6812243	0.87[AMR][1000 genomes]
rs6812277	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85138600-85142200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:85139200-85140200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr4:85139200-85140200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:85139200-85143200	Enhancers	Fetal Lung	lung
5	chr4:85139600-85142200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:85139600-85142800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:85139800-85140200	Enhancers	Brain Hippocampus Middle	brain
8	chr4:85139800-85140400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:85139800-85140800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:85139800-85142600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:85139800-85142600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:85139800-85144400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:85140000-85140200	Flanking Active TSS	Fetal Brain Male	brain
14	chr4:85140000-85141400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:85140000-85141800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:85140000-85145000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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