Variant report

Variant	rs17008332
Chromosome Location	chr4:85139516-85139517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85139303..85141304-chr4:85144022..85145808,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1155057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11933199	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938415	1.00[EUR][1000 genomes]
rs11945983	1.00[EUR][1000 genomes]
rs11946818	1.00[EUR][1000 genomes]
rs17008216	1.00[EUR][1000 genomes]
rs1921889	1.00[EUR][1000 genomes]
rs28895994	1.00[EUR][1000 genomes]
rs6812243	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6812277	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6823550	0.87[AMR][1000 genomes]
rs72953409	1.00[EUR][1000 genomes]
rs73831429	1.00[EUR][1000 genomes]
rs976896	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85138600-85139600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:85138600-85139800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:85138600-85142200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:85138800-85139800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:85139000-85139600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:85139000-85139800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:85139000-85140000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:85139200-85139600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:85139200-85139600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:85139200-85139600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:85139200-85139600	Active TSS	Brain Anterior Caudate	brain
12	chr4:85139200-85139600	Active TSS	Brain Hippocampus Middle	brain
13	chr4:85139200-85139800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:85139200-85139800	Active TSS	Brain Substantia Nigra	brain
15	chr4:85139200-85140200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:85139200-85140200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr4:85139200-85143200	Enhancers	Fetal Lung	lung
18	chr4:85139400-85139600	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr4:85139400-85139800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:85139400-85140000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:85139400-85140000	Active TSS	Brain Cingulate Gyrus	brain

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