Variant report

Variant	rs72961911
Chromosome Location	chr4:85258194-85258195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72955959	0.85[AFR][1000 genomes]
rs72955967	0.81[AFR][1000 genomes]
rs72955970	0.81[AFR][1000 genomes]
rs72961933	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85256600-85258400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:85257600-85260600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:85257800-85258800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:85258000-85258200	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr4:85258000-85259200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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