Variant report

Variant	rs17008523
Chromosome Location	chr4:85214642-85214643
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10011338	1.00[ASN][1000 genomes]
rs10023937	1.00[ASN][1000 genomes]
rs10516717	1.00[ASN][1000 genomes]
rs11932874	0.85[CEU][hapmap]
rs11945202	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509617	1.00[ASN][1000 genomes]
rs13108923	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113010	1.00[ASN][1000 genomes]
rs13118206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122718	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13126134	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131476	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141237	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495138	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495140	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596144	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008416	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008585	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008592	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822222	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967139	0.82[AMR][1000 genomes]
rs34433373	1.00[ASN][1000 genomes]
rs34468940	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35278164	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35402810	0.83[EUR][1000 genomes]
rs35677530	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35763672	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36076855	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67452968	1.00[ASN][1000 genomes]
rs6811893	1.00[ASN][1000 genomes]
rs6812508	1.00[ASN][1000 genomes]
rs6827060	1.00[ASN][1000 genomes]
rs6831519	1.00[ASN][1000 genomes]
rs6832343	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849453	1.00[ASN][1000 genomes]
rs6853025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855304	1.00[ASN][1000 genomes]
rs6855674	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71597304	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71597307	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71631371	1.00[ASN][1000 genomes]
rs7673792	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680510	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689700	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690451	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694261	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1001364	chr4:85193054-85252321	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998617	chr4:85193054-85255409	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85214000-85214800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:85214200-85215400	Weak transcription	Rectal Mucosa Donor 31	rectum

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