Variant report

Variant	rs10011338
Chromosome Location	chr4:85145977-85145978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10023937	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516717	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857226	0.88[EUR][1000 genomes]
rs11099637	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs11945202	1.00[ASN][1000 genomes]
rs13108923	1.00[ASN][1000 genomes]
rs13113010	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118206	1.00[ASN][1000 genomes]
rs13122718	1.00[ASN][1000 genomes]
rs13126134	1.00[ASN][1000 genomes]
rs13131476	1.00[ASN][1000 genomes]
rs13141237	1.00[ASN][1000 genomes]
rs1495138	1.00[ASN][1000 genomes]
rs1495140	1.00[ASN][1000 genomes]
rs1596144	1.00[ASN][1000 genomes]
rs17008416	1.00[ASN][1000 genomes]
rs17008523	1.00[ASN][1000 genomes]
rs17008585	1.00[ASN][1000 genomes]
rs17008592	1.00[ASN][1000 genomes]
rs1822222	1.00[ASN][1000 genomes]
rs34433373	1.00[ASN][1000 genomes]
rs34468940	1.00[ASN][1000 genomes]
rs35278164	1.00[ASN][1000 genomes]
rs35677530	1.00[ASN][1000 genomes]
rs35763672	1.00[ASN][1000 genomes]
rs4308355	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4380514	0.82[CEU][hapmap]
rs67452968	1.00[ASN][1000 genomes]
rs6811893	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812508	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827060	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831519	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832343	1.00[ASN][1000 genomes]
rs6849453	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853025	1.00[ASN][1000 genomes]
rs6855304	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855674	1.00[ASN][1000 genomes]
rs71597304	1.00[ASN][1000 genomes]
rs71597307	1.00[ASN][1000 genomes]
rs71631371	1.00[ASN][1000 genomes]
rs7673792	1.00[ASN][1000 genomes]
rs7680510	1.00[ASN][1000 genomes]
rs7689700	1.00[ASN][1000 genomes]
rs7690451	1.00[ASN][1000 genomes]
rs7694261	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85142200-85146400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr4:85144400-85146400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:85144600-85146800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:85144800-85146800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:85144800-85147000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:85145000-85146600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:85145000-85146800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:85145400-85146200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:85145400-85152600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:85145600-85146000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:85145800-85146600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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