Variant report

Variant	rs34433373
Chromosome Location	chr4:85163608-85163609
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:85163562-85163612	GM12891	blood:	n/a
2	chr4:85163562-85163612	K562	blood:	n/a
3	chr4:85163562-85163612	AG10803	skin:	n/a
4	chr4:85163562-85163612	HPAEpiC	pulmonary alveolar:	n/a
5	chr4:85163562-85163612	RPTEC	kidney:	n/a
6	chr4:85163562-85163612	Hepatocyte	liver:	n/a
7	chr4:85163562-85163612	HEK293	kidney:	embryo
8	chr4:85163562-85163612	A549	lung:	n/a
9	chr4:85163562-85163612	SAEC	small airway:	n/a
10	chr4:85163562-85163612	PrEC	prostate:	n/a
11	chr4:85163562-85163612	HNPCEpiC	eye:	n/a
12	chr4:85163562-85163612	H1-hESC	embryonic stem cell:	embryo
13	chr4:85163562-85163612	Hela-S3	cervix:	n/a
14	chr4:85163562-85163612	LNCaP	prostate:	n/a
15	chr4:85163562-85163612	NHDF-neo	bronchial:	n/a
16	chr4:85163562-85163612	ProgFib	skin:	n/a
17	chr4:85163562-85163612	NB4	blood:	n/a
18	chr4:85163562-85163612	HAEpiC	amniotic membrane:	n/a
19	chr4:85163562-85163612	HRCEpiC	kidney:	n/a
20	chr4:85163562-85163612	NHBE	bronchial:	n/a
21	chr4:85163562-85163612	SK-N-SH	brain:	n/a
22	chr4:85163562-85163612	SKMC	muscle:	n/a
23	chr4:85163562-85163612	PANC-1	pancreas:	n/a
24	chr4:85163562-85163612	GM12878	blood:	n/a
25	chr4:85163562-85163612	SK-N-SH_RA	brain:	n/a
26	chr4:85163562-85163612	HCT-116	colon:	n/a
27	chr4:85163562-85163612	NH-A	brain:	n/a
28	chr4:85163562-85163612	SK-N-MC	brain:	n/a
29	chr4:85163562-85163612	U87	brain:	n/a
30	chr4:85163562-85163612	ECC-1	luminal epithelium:	n/a
31	chr4:85163562-85163612	HCPEpiC	choroid plexus:	n/a
32	chr4:85163562-85163612	GM12892	blood:	n/a
33	chr4:85163562-85163612	NT2-D1	testis:	n/a
34	chr4:85163562-85163612	HCF	heart:	n/a
35	chr4:85163562-85163612	GM19239	blood:	n/a
36	chr4:85163562-85163612	AG04449	skin:	fetal
37	chr4:85163562-85163612	CMK	blood:	n/a
38	chr4:85163562-85163612	BE2_C	brain:	n/a
39	chr4:85163562-85163612	MCF10A-Er-Src	breast:	n/a
40	chr4:85163562-85163612	PFSK-1	brain:	n/a
41	chr4:85163562-85163612	AG09309	skin:	n/a
42	chr4:85163562-85163612	Caco-2	colon:	n/a
43	chr4:85163562-85163612	HCM	heart:	n/a
44	chr4:85163562-85163612	HRPEpiC	eye:	n/a
45	chr4:85163562-85163612	HL-60	blood:	n/a
46	chr4:85163562-85163612	HMEC	breast:	n/a
47	chr4:85163562-85163612	Jurkat	blood:	n/a
48	chr4:85163562-85163612	MCF-7	breast:	n/a
49	chr4:85163562-85163612	HUVEC	blood vessel:	n/a
50	chr4:85163562-85163612	IMR90	lung:	fetal

No data

Variant related genes	Relation type
ENSG00000214980	CpG island

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10011338	1.00[ASN][1000 genomes]
rs10023937	1.00[ASN][1000 genomes]
rs10516717	1.00[ASN][1000 genomes]
rs11945202	1.00[ASN][1000 genomes]
rs13108923	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113010	1.00[ASN][1000 genomes]
rs13118206	1.00[ASN][1000 genomes]
rs13122718	1.00[ASN][1000 genomes]
rs13126134	1.00[ASN][1000 genomes]
rs13131476	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141237	1.00[ASN][1000 genomes]
rs1495138	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495140	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596144	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008416	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008523	1.00[ASN][1000 genomes]
rs17008585	1.00[ASN][1000 genomes]
rs17008592	1.00[ASN][1000 genomes]
rs17008878	0.89[AMR][1000 genomes]
rs1822222	1.00[ASN][1000 genomes]
rs34468940	1.00[ASN][1000 genomes]
rs35278164	1.00[ASN][1000 genomes]
rs35402810	0.90[EUR][1000 genomes]
rs35677530	1.00[ASN][1000 genomes]
rs35763672	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67452968	1.00[ASN][1000 genomes]
rs6811893	1.00[ASN][1000 genomes]
rs6812508	1.00[ASN][1000 genomes]
rs6827060	1.00[ASN][1000 genomes]
rs6831519	1.00[ASN][1000 genomes]
rs6832343	1.00[ASN][1000 genomes]
rs6849453	1.00[ASN][1000 genomes]
rs6853025	1.00[ASN][1000 genomes]
rs6855304	1.00[ASN][1000 genomes]
rs6855674	1.00[ASN][1000 genomes]
rs71597304	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71597307	1.00[ASN][1000 genomes]
rs71631371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673792	1.00[ASN][1000 genomes]
rs7680510	1.00[ASN][1000 genomes]
rs7689700	1.00[ASN][1000 genomes]
rs7690451	1.00[ASN][1000 genomes]
rs7694261	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85157600-85171000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85160800-85165400	Weak transcription	K562	blood
3	chr4:85161000-85165600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links