Variant report
| Variant | rs67452968 |
|---|---|
| Chromosome Location | chr4:85150405-85150406 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10011338 | 1.00[ASN][1000 genomes] |
| rs10023937 | 1.00[ASN][1000 genomes] |
| rs10516717 | 1.00[ASN][1000 genomes] |
| rs11945202 | 1.00[ASN][1000 genomes] |
| rs13108923 | 1.00[ASN][1000 genomes] |
| rs13113010 | 1.00[ASN][1000 genomes] |
| rs13118206 | 1.00[ASN][1000 genomes] |
| rs13122718 | 1.00[ASN][1000 genomes] |
| rs13126134 | 1.00[ASN][1000 genomes] |
| rs13131476 | 1.00[ASN][1000 genomes] |
| rs13141237 | 1.00[ASN][1000 genomes] |
| rs1495138 | 1.00[ASN][1000 genomes] |
| rs1495140 | 1.00[ASN][1000 genomes] |
| rs1596144 | 1.00[ASN][1000 genomes] |
| rs17008416 | 1.00[ASN][1000 genomes] |
| rs17008523 | 1.00[ASN][1000 genomes] |
| rs17008585 | 1.00[ASN][1000 genomes] |
| rs17008592 | 1.00[ASN][1000 genomes] |
| rs1822222 | 1.00[ASN][1000 genomes] |
| rs34433373 | 1.00[ASN][1000 genomes] |
| rs34468940 | 1.00[ASN][1000 genomes] |
| rs35278164 | 1.00[ASN][1000 genomes] |
| rs35677530 | 1.00[ASN][1000 genomes] |
| rs35763672 | 1.00[ASN][1000 genomes] |
| rs6811893 | 1.00[ASN][1000 genomes] |
| rs6812508 | 1.00[ASN][1000 genomes] |
| rs6827060 | 1.00[ASN][1000 genomes] |
| rs6831519 | 1.00[ASN][1000 genomes] |
| rs6832343 | 1.00[ASN][1000 genomes] |
| rs6849453 | 1.00[ASN][1000 genomes] |
| rs6853025 | 1.00[ASN][1000 genomes] |
| rs6855304 | 1.00[ASN][1000 genomes] |
| rs6855674 | 1.00[ASN][1000 genomes] |
| rs71597304 | 1.00[ASN][1000 genomes] |
| rs71597307 | 1.00[ASN][1000 genomes] |
| rs71631371 | 1.00[ASN][1000 genomes] |
| rs7673792 | 1.00[ASN][1000 genomes] |
| rs7680510 | 1.00[ASN][1000 genomes] |
| rs7689700 | 1.00[ASN][1000 genomes] |
| rs7690451 | 1.00[ASN][1000 genomes] |
| rs7694261 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv524354 | chr4:85006975-85215142 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv829996 | chr4:85016673-85173300 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv879514 | chr4:85057124-85272572 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv1012379 | chr4:85071268-85205732 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:85145400-85152600 | Weak transcription | H9 Cell Line | embryonic stem cell |
