Variant report

Variant	rs7680510
Chromosome Location	chr4:85259637-85259638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10011338	1.00[ASN][1000 genomes]
rs10023937	1.00[ASN][1000 genomes]
rs10516717	1.00[ASN][1000 genomes]
rs11945202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509617	1.00[ASN][1000 genomes]
rs13108923	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113010	1.00[ASN][1000 genomes]
rs13118206	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122718	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13126134	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131476	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141237	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495138	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495140	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596144	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008416	1.00[ASN][1000 genomes]
rs17008523	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008585	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008592	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822222	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34433373	1.00[ASN][1000 genomes]
rs34468940	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35278164	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677530	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35763672	1.00[ASN][1000 genomes]
rs36076855	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67452968	1.00[ASN][1000 genomes]
rs6811893	1.00[ASN][1000 genomes]
rs6812508	1.00[ASN][1000 genomes]
rs6827060	1.00[ASN][1000 genomes]
rs6831519	1.00[ASN][1000 genomes]
rs6832343	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849453	1.00[ASN][1000 genomes]
rs6853025	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855304	1.00[ASN][1000 genomes]
rs6855674	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71597304	1.00[ASN][1000 genomes]
rs71597307	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71631371	1.00[ASN][1000 genomes]
rs7673792	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689700	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690451	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694261	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85257600-85260600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:85259400-85260000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr4:85259400-85260200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:85259400-85260200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:85259600-85259800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:85259600-85259800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:85259600-85259800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:85259600-85260000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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