Variant report

Variant	rs10023937
Chromosome Location	chr4:85149945-85149946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10011338	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516717	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857226	0.88[EUR][1000 genomes]
rs11099637	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs11945202	1.00[ASN][1000 genomes]
rs13108923	1.00[ASN][1000 genomes]
rs13113010	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118206	1.00[ASN][1000 genomes]
rs13122718	1.00[ASN][1000 genomes]
rs13126134	1.00[ASN][1000 genomes]
rs13131476	1.00[ASN][1000 genomes]
rs13141237	1.00[ASN][1000 genomes]
rs1495138	1.00[ASN][1000 genomes]
rs1495140	1.00[ASN][1000 genomes]
rs1596144	1.00[ASN][1000 genomes]
rs17008416	1.00[ASN][1000 genomes]
rs17008523	1.00[ASN][1000 genomes]
rs17008585	1.00[ASN][1000 genomes]
rs17008592	1.00[ASN][1000 genomes]
rs1822222	1.00[ASN][1000 genomes]
rs34433373	1.00[ASN][1000 genomes]
rs34468940	1.00[ASN][1000 genomes]
rs35278164	1.00[ASN][1000 genomes]
rs35677530	1.00[ASN][1000 genomes]
rs35763672	1.00[ASN][1000 genomes]
rs4308355	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4380514	0.82[CEU][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap]
rs67452968	1.00[ASN][1000 genomes]
rs6811893	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812508	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827060	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831519	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832343	1.00[ASN][1000 genomes]
rs6849453	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853025	1.00[ASN][1000 genomes]
rs6855304	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855674	1.00[ASN][1000 genomes]
rs71597304	1.00[ASN][1000 genomes]
rs71597307	1.00[ASN][1000 genomes]
rs71631371	1.00[ASN][1000 genomes]
rs7673792	1.00[ASN][1000 genomes]
rs7680510	1.00[ASN][1000 genomes]
rs7689700	1.00[ASN][1000 genomes]
rs7690451	1.00[ASN][1000 genomes]
rs7694261	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10023937	BMP3	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85145400-85152600	Weak transcription	H9 Cell Line	embryonic stem cell

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