Variant report

Variant	rs4308355
Chromosome Location	chr4:85145628-85145629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10011338	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10023937	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10516717	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10857226	0.85[EUR][1000 genomes]
rs11099637	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs13113010	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4380514	0.82[CEU][hapmap]
rs6811893	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6812508	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6827060	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6831519	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6849453	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6855304	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85142200-85146400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr4:85144400-85146400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:85144600-85146800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:85144800-85146800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:85144800-85147000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:85145000-85146600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:85145000-85146800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:85145200-85145800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:85145400-85146200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:85145400-85152600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:85145600-85145800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr4:85145600-85146000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links