Variant report
| Variant | rs12509617 |
|---|---|
| Chromosome Location | chr4:85385825-85385826 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11945202 | 1.00[ASN][1000 genomes] |
| rs13108923 | 1.00[ASN][1000 genomes] |
| rs13118206 | 1.00[ASN][1000 genomes] |
| rs13122718 | 1.00[ASN][1000 genomes] |
| rs13126134 | 1.00[ASN][1000 genomes] |
| rs13131476 | 1.00[ASN][1000 genomes] |
| rs13141237 | 1.00[ASN][1000 genomes] |
| rs1495138 | 1.00[ASN][1000 genomes] |
| rs1495140 | 1.00[ASN][1000 genomes] |
| rs1596144 | 1.00[ASN][1000 genomes] |
| rs17008523 | 1.00[ASN][1000 genomes] |
| rs17008585 | 1.00[ASN][1000 genomes] |
| rs17008592 | 1.00[ASN][1000 genomes] |
| rs1822222 | 1.00[ASN][1000 genomes] |
| rs34468940 | 1.00[ASN][1000 genomes] |
| rs35278164 | 1.00[ASN][1000 genomes] |
| rs35677530 | 1.00[ASN][1000 genomes] |
| rs6832343 | 1.00[ASN][1000 genomes] |
| rs6853025 | 1.00[ASN][1000 genomes] |
| rs6855674 | 1.00[ASN][1000 genomes] |
| rs71597307 | 1.00[ASN][1000 genomes] |
| rs7673792 | 1.00[ASN][1000 genomes] |
| rs7680510 | 1.00[ASN][1000 genomes] |
| rs7689700 | 1.00[ASN][1000 genomes] |
| rs7690451 | 1.00[ASN][1000 genomes] |
| rs7694261 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829997 | chr4:85244076-85409405 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv829998 | chr4:85299693-85473450 | Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:85377800-85387400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
