Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10001112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021127	0.89[AMR][1000 genomes]
rs11930802	1.00[EUR][1000 genomes]
rs11934590	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1444955	1.00[EUR][1000 genomes]
rs1495144	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17008641	1.00[EUR][1000 genomes]
rs17008673	0.89[AMR][1000 genomes]
rs1994956	1.00[EUR][1000 genomes]
rs2083665	1.00[EUR][1000 genomes]
rs2119793	1.00[EUR][1000 genomes]
rs28372645	0.89[AMR][1000 genomes]
rs28431455	1.00[EUR][1000 genomes]
rs28523312	1.00[EUR][1000 genomes]
rs28718327	0.89[AMR][1000 genomes]
rs437295	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs438500	1.00[EUR][1000 genomes]
rs57866246	1.00[EUR][1000 genomes]
rs6816368	0.89[AMR][1000 genomes]
rs6825565	1.00[EUR][1000 genomes]
rs6826424	1.00[EUR][1000 genomes]
rs6828383	1.00[EUR][1000 genomes]
rs6831720	1.00[EUR][1000 genomes]
rs72955273	1.00[EUR][1000 genomes]
rs72961932	1.00[AMR][1000 genomes]
rs72962002	1.00[AMR][1000 genomes]
rs7668554	1.00[EUR][1000 genomes]
rs7668852	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7691569	1.00[EUR][1000 genomes]
rs7699309	0.89[AMR][1000 genomes]
rs9990978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85272800-85284600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: