Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10001112	1.00[EUR][1000 genomes]
rs10012964	1.00[EUR][1000 genomes]
rs11930802	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11934590	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1444955	1.00[EUR][1000 genomes]
rs1495144	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17008641	1.00[EUR][1000 genomes]
rs1994956	1.00[EUR][1000 genomes]
rs2083665	1.00[EUR][1000 genomes]
rs2119793	1.00[EUR][1000 genomes]
rs28431455	1.00[EUR][1000 genomes]
rs28523312	1.00[EUR][1000 genomes]
rs438500	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57866246	1.00[EUR][1000 genomes]
rs6825565	1.00[EUR][1000 genomes]
rs6826424	1.00[EUR][1000 genomes]
rs6828383	1.00[EUR][1000 genomes]
rs6831720	1.00[EUR][1000 genomes]
rs72955273	1.00[EUR][1000 genomes]
rs7668554	1.00[EUR][1000 genomes]
rs7668852	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7691569	1.00[EUR][1000 genomes]
rs9990978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85301200-85304000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
2	chr4:85301400-85303600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:85302000-85303800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:85302200-85304000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr4:85302600-85305200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:85302800-85304600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr4:85303000-85306000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:85303200-85304000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:85303400-85303800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:85303400-85305800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: