Variant report
| Variant | rs1495144 |
|---|---|
| Chromosome Location | chr4:85214944-85214945 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10001112 | 1.00[EUR][1000 genomes] |
| rs10012964 | 1.00[EUR][1000 genomes] |
| rs11930802 | 1.00[EUR][1000 genomes] |
| rs11934590 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs1444955 | 1.00[EUR][1000 genomes] |
| rs17008641 | 1.00[EUR][1000 genomes] |
| rs1994956 | 1.00[EUR][1000 genomes] |
| rs2083665 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2119793 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28431455 | 1.00[EUR][1000 genomes] |
| rs28523312 | 1.00[EUR][1000 genomes] |
| rs28727985 | 0.85[AMR][1000 genomes] |
| rs437295 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs438500 | 1.00[EUR][1000 genomes] |
| rs57866246 | 1.00[EUR][1000 genomes] |
| rs6825565 | 1.00[EUR][1000 genomes] |
| rs6826424 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6828383 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6831720 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72955273 | 1.00[EUR][1000 genomes] |
| rs72955986 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72955991 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7668554 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7668852 | 1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7691569 | 1.00[EUR][1000 genomes] |
| rs9990978 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv524354 | chr4:85006975-85215142 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv879514 | chr4:85057124-85272572 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1001364 | chr4:85193054-85252321 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv998617 | chr4:85193054-85255409 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:85214200-85215400 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 2 | chr4:85214800-85215000 | Enhancers | Rectal Mucosa Donor 29 | rectum |
