Variant report

Variant	rs41277783
Chromosome Location	chr9:108311553-108311554
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108310997..108313277-chr9:108319909..108321430,2	K562	blood:
2	chr9:108311203..108313649-chr9:108317166..108319459,2	K562	blood:

Variant related genes	Relation type
ENSG00000106692	Chromatin interaction
ENSG00000228317	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs41277789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41277795	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41313301	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41316524	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893692	chr9:108218852-108320988	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv1050141	chr9:108219667-108317424	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
3	nsv1049133	chr9:108292302-108356068	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108279000-108317600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:108279200-108313000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:108282400-108312400	Weak transcription	HepG2	liver
4	chr9:108282400-108319800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:108282400-108319800	Weak transcription	Left Ventricle	heart
6	chr9:108282400-108319800	Weak transcription	Psoas Muscle	Psoas
7	chr9:108282600-108319800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:108292600-108319800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:108293800-108319800	Weak transcription	Liver	Liver
10	chr9:108294800-108312000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:108294800-108319800	Weak transcription	Hela-S3	cervix
12	chr9:108295600-108319800	Weak transcription	Aorta	Aorta
13	chr9:108296400-108316200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:108297200-108311800	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:108297600-108311600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:108297600-108319800	Weak transcription	NHLF	lung
17	chr9:108297800-108319200	Weak transcription	Dnd41	blood
18	chr9:108297800-108319800	Weak transcription	Adipose Nuclei	Adipose
19	chr9:108298000-108319800	Weak transcription	NHDF-Ad	bronchial
20	chr9:108298400-108312200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:108298600-108316000	Weak transcription	Fetal Brain Female	brain
22	chr9:108298800-108311600	Weak transcription	NH-A	brain
23	chr9:108298800-108314000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:108298800-108314400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:108298800-108319800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:108300200-108316200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:108300400-108313200	Weak transcription	HSMMtube	muscle
28	chr9:108301000-108319800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:108301400-108319800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr9:108302200-108319800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:108303000-108311600	Weak transcription	HSMM	muscle
32	chr9:108304400-108314200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr9:108304400-108319800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:108305000-108319800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr9:108305600-108314200	Weak transcription	Fetal Kidney	kidney
36	chr9:108305800-108319200	Weak transcription	GM12878-XiMat	blood
37	chr9:108305800-108319800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:108307200-108312800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:108307200-108319800	Weak transcription	Ovary	ovary
40	chr9:108309000-108319800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:108309200-108319600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:108309200-108319800	Weak transcription	HMEC	breast
43	chr9:108309400-108319800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:108309600-108319800	Weak transcription	A549	lung
45	chr9:108310400-108319400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr9:108311000-108313400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:108311000-108313800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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