Variant report

Variant	rs41316524
Chromosome Location	chr9:108402036-108402037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108400818..108403460-chr9:108405807..108408679,2	K562	blood:
2	chr9:108395259..108397968-chr9:108400674..108403020,2	MCF-7	breast:
3	chr9:108400600..108402470-chr9:108402643..108404478,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs41277783	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41277789	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41277795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41313301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41316542	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108335400-108403400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:108338400-108403400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr9:108349400-108402200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:108350800-108403800	Weak transcription	Fetal Heart	heart
5	chr9:108354400-108403600	Weak transcription	Brain Substantia Nigra	brain
6	chr9:108354400-108412400	Weak transcription	Right Ventricle	heart
7	chr9:108354600-108412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:108355200-108404200	Weak transcription	Brain Germinal Matrix	brain
9	chr9:108355200-108409200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:108356000-108403800	Weak transcription	Fetal Thymus	thymus
11	chr9:108358200-108405000	Weak transcription	HUVEC	blood vessel
12	chr9:108366800-108403400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr9:108366800-108405400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr9:108366800-108418200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:108366800-108418200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:108367200-108402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:108367200-108403400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:108367400-108407800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:108372200-108402200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:108373200-108404600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr9:108383400-108403400	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:108384200-108403600	Weak transcription	Fetal Brain Female	brain
23	chr9:108384400-108403800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr9:108389600-108403200	Weak transcription	A549	lung
25	chr9:108391800-108404600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr9:108392000-108407000	Weak transcription	Fetal Lung	lung
27	chr9:108393600-108402400	Weak transcription	NHEK	skin
28	chr9:108393600-108402800	Weak transcription	Pancreas	Pancrea
29	chr9:108394600-108403600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr9:108396200-108403400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr9:108396200-108409200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr9:108396600-108403800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr9:108397000-108402400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:108397400-108405200	Weak transcription	Aorta	Aorta
35	chr9:108397600-108402400	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr9:108397600-108404000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:108397600-108404000	Weak transcription	Fetal Stomach	stomach
38	chr9:108397600-108404000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr9:108397600-108404200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:108397600-108409200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:108397600-108411800	Weak transcription	Lung	lung
42	chr9:108397800-108402800	Weak transcription	Brain Angular Gyrus	brain
43	chr9:108397800-108407000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr9:108398000-108403600	Weak transcription	Liver	Liver
45	chr9:108398000-108405000	Weak transcription	Brain Hippocampus Middle	brain
46	chr9:108398400-108403200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr9:108398400-108404800	Weak transcription	Dnd41	blood
48	chr9:108398400-108408800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr9:108398600-108402600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:108399000-108403600	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links