Variant report

Variant	rs41281174
Chromosome Location	chr9:97523345-97523346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97523331..97524905-chr9:97684127..97686565,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12684154	1.00[AMR][1000 genomes]
rs12685042	0.81[AFR][1000 genomes]
rs16911698	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1806996	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1992487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59011771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6479568	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7019148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7020933	1.00[AMR][1000 genomes]
rs7022794	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7037517	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7045005	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72746536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72746573	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72747035	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72747037	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72747052	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7850601	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7850680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7851826	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7860195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7867380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97489600-97524800	Weak transcription	Esophagus	oesophagus
2	chr9:97506200-97533400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:97506400-97526000	Weak transcription	Small Intestine	intestine
4	chr9:97509200-97536000	Weak transcription	Pancreas	Pancrea
5	chr9:97512600-97530400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr9:97512600-97540800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr9:97512600-97544600	Weak transcription	Psoas Muscle	Psoas
8	chr9:97519800-97531200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:97519800-97544600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:97520400-97525800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr9:97520400-97531800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:97520600-97529600	Weak transcription	NH-A	brain
13	chr9:97520600-97530600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:97520800-97531200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:97521200-97523800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:97521200-97525000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:97521400-97527400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr9:97521600-97523400	Strong transcription	Rectal Smooth Muscle	rectum
19	chr9:97521600-97523600	Strong transcription	Fetal Stomach	stomach
20	chr9:97521600-97524000	Strong transcription	Fetal Thymus	thymus
21	chr9:97521600-97524200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:97521800-97523400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:97521800-97523400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:97521800-97523400	Strong transcription	Osteobl	bone
25	chr9:97521800-97523600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr9:97521800-97524000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:97521800-97524200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:97521800-97541200	Weak transcription	Right Ventricle	heart
29	chr9:97522000-97523400	Strong transcription	Primary B cells from cord blood	blood
30	chr9:97522000-97523400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr9:97522000-97523400	Strong transcription	Lung	lung
32	chr9:97522000-97523400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr9:97522000-97523400	Strong transcription	Dnd41	blood
34	chr9:97522000-97523600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:97522000-97523600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr9:97522000-97523600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:97522000-97523600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:97522000-97523600	Strong transcription	Fetal Intestine Small	intestine
39	chr9:97522000-97523600	Strong transcription	Placenta	Placenta
40	chr9:97522000-97523600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr9:97522000-97523600	Strong transcription	Thymus	Thymus
42	chr9:97522000-97523800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:97522000-97523800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr9:97522000-97524000	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr9:97522000-97524000	Strong transcription	Fetal Muscle Leg	muscle
46	chr9:97522000-97524200	Strong transcription	Fetal Intestine Large	intestine
47	chr9:97522200-97523400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:97522200-97523400	Strong transcription	Primary T cells from cord blood	blood
49	chr9:97522200-97523400	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:97522200-97523400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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