Variant report

Variant	rs7020933
Chromosome Location	chr9:97483009-97483010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97482485..97485496-chr9:97487449..97489584,3	MCF-7	breast:
2	chr9:97457022..97459092-chr9:97482059..97483636,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 177 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs12682754	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12683036	0.93[ASN][1000 genomes]
rs12683213	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12684117	1.00[EUR][1000 genomes]
rs12684139	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12684154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12684461	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12684470	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12685042	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12685623	0.80[ASN][1000 genomes]
rs12685907	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12686277	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16905557	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911698	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16911801	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911802	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911817	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911820	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911821	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911826	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911846	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1806996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1992487	1.00[AMR][1000 genomes]
rs34330897	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3847309	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3847310	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3886567	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41281174	1.00[AMR][1000 genomes]
rs55692018	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55770541	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55782932	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55791673	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55793565	1.00[EUR][1000 genomes]
rs55814456	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55884189	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55941337	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55946331	1.00[EUR][1000 genomes]
rs55949944	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55961278	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55999562	0.83[EUR][1000 genomes]
rs56044075	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56048239	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56160214	0.93[ASN][1000 genomes]
rs56191928	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56242694	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56255048	0.93[ASN][1000 genomes]
rs56278112	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56319051	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56328305	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56330504	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57057766	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58297866	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58574914	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59011771	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59196614	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6479568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7019148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7022794	1.00[AMR][1000 genomes]
rs7025527	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7037510	0.83[EUR][1000 genomes]
rs7037517	1.00[AMR][1000 genomes]
rs7041582	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7045005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746511	1.00[EUR][1000 genomes]
rs72746517	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746519	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746526	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746527	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746532	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746534	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746541	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746543	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746550	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746556	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746558	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746559	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746560	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746561	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746562	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746567	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746568	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746570	0.80[ASN][1000 genomes]
rs72746573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746574	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746588	1.00[EUR][1000 genomes]
rs72746590	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72746593	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72746594	1.00[EUR][1000 genomes]
rs72746599	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747010	1.00[EUR][1000 genomes]
rs72747015	1.00[EUR][1000 genomes]
rs72747018	1.00[EUR][1000 genomes]
rs72747021	1.00[EUR][1000 genomes]
rs72747023	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747025	1.00[EUR][1000 genomes]
rs72747030	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747035	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747037	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747047	1.00[EUR][1000 genomes]
rs72747052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747058	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72748511	1.00[EUR][1000 genomes]
rs72748513	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748515	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748516	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748519	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748526	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748527	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748528	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748529	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748530	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748531	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748533	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748535	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748538	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748539	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748540	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748542	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748544	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748546	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748547	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748548	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748549	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748550	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748551	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748553	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748555	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748556	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748557	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748558	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748560	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748561	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72748564	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748565	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748566	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748574	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748577	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748578	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748579	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748582	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748586	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748587	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748590	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748591	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748593	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748594	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748599	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748602	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750304	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750306	1.00[EUR][1000 genomes]
rs72750307	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750308	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750309	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750310	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750312	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750313	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750317	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750322	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750323	1.00[EUR][1000 genomes]
rs72750324	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750325	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750326	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750327	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750328	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750329	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750332	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7465900	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7848054	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7850601	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7850680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7851826	1.00[AMR][1000 genomes]
rs7860195	1.00[AMR][1000 genomes]
rs7864706	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7867380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97479000-97483200	Weak transcription	HepG2	liver
2	chr9:97479000-97488400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:97480000-97483400	Enhancers	Placenta	Placenta
4	chr9:97480000-97483800	Enhancers	NHEK	skin
5	chr9:97480000-97484200	Enhancers	HMEC	breast
6	chr9:97480400-97484200	Weak transcription	NHDF-Ad	bronchial
7	chr9:97481000-97483800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:97481400-97483800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:97481400-97484000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:97482800-97483200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:97483000-97483600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links