Variant report

Variant	rs72748561
Chromosome Location	chr9:97653887-97653888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 202 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs1004813	0.80[ASN][1000 genomes]
rs10512252	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12682754	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12683036	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12683213	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12684072	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12684117	1.00[EUR][1000 genomes]
rs12684139	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12684154	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12684461	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12684470	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12684777	0.80[ASN][1000 genomes]
rs12684781	0.80[ASN][1000 genomes]
rs12685042	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12685442	0.80[ASN][1000 genomes]
rs12685623	0.80[ASN][1000 genomes]
rs12685645	0.80[ASN][1000 genomes]
rs12685907	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12686277	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12686352	0.80[ASN][1000 genomes]
rs12686366	0.80[ASN][1000 genomes]
rs12686500	0.80[ASN][1000 genomes]
rs16905557	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911801	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911802	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911817	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911820	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911821	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911826	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911846	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1806996	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34330897	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3847309	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3847310	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3886567	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55692018	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55770541	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55782932	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55791673	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55793565	1.00[EUR][1000 genomes]
rs55795857	0.80[ASN][1000 genomes]
rs55814456	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55884189	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55885575	0.80[ASN][1000 genomes]
rs55932459	0.80[ASN][1000 genomes]
rs55941337	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55946331	1.00[EUR][1000 genomes]
rs55949944	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55961278	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55999562	0.83[EUR][1000 genomes]
rs56044075	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56048239	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56160214	0.93[ASN][1000 genomes]
rs56191928	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56242694	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56255048	0.93[ASN][1000 genomes]
rs56278112	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56319051	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56328305	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56330504	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57057766	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58297866	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58574914	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59196614	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6479568	1.00[EUR][1000 genomes]
rs7019148	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7020933	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7025527	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7037510	0.83[EUR][1000 genomes]
rs7041582	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7045005	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746511	1.00[EUR][1000 genomes]
rs72746517	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746519	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746526	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746527	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746532	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746534	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746536	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746541	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746543	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746550	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746556	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746558	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746559	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746560	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746561	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746562	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746567	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746568	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746570	0.80[ASN][1000 genomes]
rs72746573	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746574	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72746588	1.00[EUR][1000 genomes]
rs72746590	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72746593	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72746594	1.00[EUR][1000 genomes]
rs72746599	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747010	1.00[EUR][1000 genomes]
rs72747015	1.00[EUR][1000 genomes]
rs72747018	1.00[EUR][1000 genomes]
rs72747021	1.00[EUR][1000 genomes]
rs72747023	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747025	1.00[EUR][1000 genomes]
rs72747030	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747035	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747037	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747047	1.00[EUR][1000 genomes]
rs72747052	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72747058	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72748511	1.00[EUR][1000 genomes]
rs72748513	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748515	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748516	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748519	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748526	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748527	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748528	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748529	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748530	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748531	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748533	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748535	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748538	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748539	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748540	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748542	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748544	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748546	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748547	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748548	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748549	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748550	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748551	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748553	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748555	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748556	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748557	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748558	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748560	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748564	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748565	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748566	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748574	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748577	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748578	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748579	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748582	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748586	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748587	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748590	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748591	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748593	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748594	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748599	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748602	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750304	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750306	1.00[EUR][1000 genomes]
rs72750307	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750308	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750309	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750310	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750312	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750313	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750317	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750322	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750323	1.00[EUR][1000 genomes]
rs72750324	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750325	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750326	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750327	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750328	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750329	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750332	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750334	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750337	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750338	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750339	1.00[EUR][1000 genomes]
rs72750343	0.80[ASN][1000 genomes]
rs72750345	0.80[ASN][1000 genomes]
rs72750347	0.80[ASN][1000 genomes]
rs72750348	0.80[ASN][1000 genomes]
rs72750349	0.80[ASN][1000 genomes]
rs72750353	0.80[ASN][1000 genomes]
rs72750354	0.80[ASN][1000 genomes]
rs72750355	0.80[ASN][1000 genomes]
rs72750356	0.80[ASN][1000 genomes]
rs72750360	0.80[ASN][1000 genomes]
rs72750361	0.80[ASN][1000 genomes]
rs72750362	0.80[ASN][1000 genomes]
rs72750363	0.80[ASN][1000 genomes]
rs72750368	0.80[ASN][1000 genomes]
rs72750372	0.80[ASN][1000 genomes]
rs72750380	0.80[ASN][1000 genomes]
rs72750381	0.80[ASN][1000 genomes]
rs7465900	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7848054	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7850601	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7850680	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7864706	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7867380	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
2	chr9:97638600-97661800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97648000-97657400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:97648400-97656400	Weak transcription	NH-A	brain
5	chr9:97648400-97657400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:97648600-97654600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:97648600-97654600	Weak transcription	Pancreas	Pancrea
8	chr9:97648600-97654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:97648600-97656000	Weak transcription	Liver	Liver
10	chr9:97650400-97654600	Weak transcription	Osteobl	bone
11	chr9:97650400-97655800	Weak transcription	Stomach Mucosa	stomach
12	chr9:97650600-97654200	ZNF genes & repeats	A549	lung
13	chr9:97650600-97656000	Weak transcription	NHLF	lung
14	chr9:97651000-97655400	Weak transcription	Hela-S3	cervix
15	chr9:97651800-97654200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:97652800-97654400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:97653400-97654000	ZNF genes & repeats	Brain Hippocampus Middle	brain
18	chr9:97653400-97662400	Weak transcription	Fetal Brain Male	brain
19	chr9:97653600-97656200	Weak transcription	HSMM	muscle
20	chr9:97653800-97654200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
21	chr9:97653800-97654800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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