Variant report

Variant	rs72746532
Chromosome Location	chr9:97564438-97564439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97563933..97571351-chr9:97576672..97582632,18	MCF-7	breast:
2	chr9:97432815..97434625-chr9:97564258..97567055,2	MCF-7	breast:
3	chr9:97562492..97588737-chr9:97670126..97691056,102	MCF-7	breast:
4	chr9:97564303..97567097-chr9:97855435..97857190,2	MCF-7	breast:
5	chr9:97557152..97559081-chr9:97564321..97566954,3	MCF-7	breast:
6	chr9:97558614..97561241-chr9:97564364..97566468,2	K562	blood:
7	chr9:97563450..97566296-chr9:97770387..97772298,3	MCF-7	breast:
8	chr9:97563515..97567876-chr9:97764725..97767741,5	MCF-7	breast:
9	chr9:97558473..97564935-chr9:97678907..97687123,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 175 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10512252	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12682754	1.00[EUR][1000 genomes]
rs12683036	0.86[ASN][1000 genomes]
rs12683213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684072	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684117	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12684139	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684154	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684461	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684470	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12685042	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12685623	1.00[ASN][1000 genomes]
rs12685907	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12686277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905557	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911801	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911802	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911817	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911820	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911821	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911826	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911846	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1806996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34330897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847309	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3847310	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3886567	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55692018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55737548	0.85[ASN][1000 genomes]
rs55770541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55782932	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55791673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55793565	1.00[EUR][1000 genomes]
rs55814456	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55884189	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55941337	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55946331	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55949944	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55961278	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55999562	0.83[EUR][1000 genomes]
rs56044075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56048239	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56160214	0.86[ASN][1000 genomes]
rs56191928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56242694	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56255048	0.86[ASN][1000 genomes]
rs56278112	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56319051	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56328305	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56330504	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57057766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58297866	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58574914	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59196614	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479568	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019148	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7020933	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7025527	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7037510	0.83[EUR][1000 genomes]
rs7041582	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7045005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746511	1.00[EUR][1000 genomes]
rs72746517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746570	1.00[ASN][1000 genomes]
rs72746573	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746588	1.00[EUR][1000 genomes]
rs72746590	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72746593	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72746594	1.00[EUR][1000 genomes]
rs72746599	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72747010	1.00[EUR][1000 genomes]
rs72747015	1.00[EUR][1000 genomes]
rs72747018	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747021	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747025	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747047	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72747052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748511	1.00[EUR][1000 genomes]
rs72748513	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748515	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748516	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748519	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748526	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748527	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748528	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748529	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748530	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748531	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748533	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748535	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748538	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748539	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748540	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748542	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748544	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748546	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748547	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748548	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748549	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748550	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748551	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748553	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748555	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748556	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748557	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748558	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748560	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748561	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72748564	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748565	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748566	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748574	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748577	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748578	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748579	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748582	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748586	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748587	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748590	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748591	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748593	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748594	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748599	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748602	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750304	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750306	1.00[EUR][1000 genomes]
rs72750307	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750308	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750309	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750310	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750312	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750313	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750317	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750322	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750323	1.00[EUR][1000 genomes]
rs72750324	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750325	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750326	1.00[EUR][1000 genomes]
rs72750327	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750328	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750329	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750332	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750334	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750337	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750338	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750339	1.00[EUR][1000 genomes]
rs7465900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848054	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7850601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864706	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7867380	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97545400-97567200	Weak transcription	Small Intestine	intestine
2	chr9:97545800-97567000	Weak transcription	Fetal Brain Female	brain
3	chr9:97548200-97564800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:97548600-97570400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:97549200-97567800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr9:97550200-97571200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:97556800-97575800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:97557400-97566800	Weak transcription	Fetal Brain Male	brain
9	chr9:97557400-97567400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr9:97560400-97570000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:97561000-97568200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:97561200-97568200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:97562000-97565800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:97562000-97567600	Strong transcription	Primary T cells from cord blood	blood
15	chr9:97562000-97572800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr9:97562200-97571200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr9:97562400-97567200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:97562600-97565000	Strong transcription	Primary B cells from cord blood	blood
19	chr9:97562800-97564800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr9:97562800-97566600	Genic enhancers	A549	lung
21	chr9:97563000-97564600	Strong transcription	HepG2	liver
22	chr9:97563000-97564800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:97563000-97565000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:97563000-97565000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr9:97563000-97565200	Strong transcription	Fetal Intestine Large	intestine
26	chr9:97563200-97565200	Enhancers	Brain Angular Gyrus	brain
27	chr9:97563200-97566200	Enhancers	NH-A	brain
28	chr9:97563400-97564600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr9:97563400-97565400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:97563400-97584200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr9:97563600-97564800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:97563600-97564800	Weak transcription	Hela-S3	cervix
33	chr9:97563600-97565000	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr9:97563600-97565600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr9:97563600-97566000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr9:97563600-97566200	Enhancers	Osteobl	bone
37	chr9:97563600-97566400	Weak transcription	Stomach Mucosa	stomach
38	chr9:97563600-97568000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr9:97563600-97569200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:97563600-97569600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr9:97563600-97594400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr9:97563800-97564600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:97563800-97564600	Weak transcription	Placenta	Placenta
44	chr9:97563800-97564600	Weak transcription	Psoas Muscle	Psoas
45	chr9:97563800-97564600	Enhancers	GM12878-XiMat	blood
46	chr9:97563800-97564800	Active TSS	Aorta	Aorta
47	chr9:97563800-97564800	Enhancers	NHEK	skin
48	chr9:97563800-97565000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:97563800-97565000	Weak transcription	Fetal Intestine Small	intestine
50	chr9:97563800-97565000	Weak transcription	Left Ventricle	heart

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