Variant report

Variant	rs55770541
Chromosome Location	chr9:97562934-97562935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97561245..97563934-chr9:97767178..97770063,2	MCF-7	breast:
2	chr9:97562492..97588737-chr9:97670126..97691056,102	MCF-7	breast:
3	chr9:97558473..97564935-chr9:97678907..97687123,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 205 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:204)

rs_ID	r²[population]
rs10512252	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12682754	1.00[EUR][1000 genomes]
rs12683036	0.86[ASN][1000 genomes]
rs12683213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684072	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684117	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12684139	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684154	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684461	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684470	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12685042	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12685623	1.00[ASN][1000 genomes]
rs12685907	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12686277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905557	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911801	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911802	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911817	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911820	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911821	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911826	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911846	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1806996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34330897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847309	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3847310	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3886567	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55692018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55737548	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs55782932	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55791673	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55793565	1.00[EUR][1000 genomes]
rs55803034	1.00[AFR][1000 genomes]
rs55814456	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55884189	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55941337	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55946331	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55949944	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55961278	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55999562	0.83[EUR][1000 genomes]
rs56044075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56048239	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56160214	0.86[ASN][1000 genomes]
rs56191928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56242694	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56255048	0.86[ASN][1000 genomes]
rs56278112	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56278300	1.00[AFR][1000 genomes]
rs56319051	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56328305	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56330504	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56339551	1.00[AFR][1000 genomes]
rs56401778	1.00[AFR][1000 genomes]
rs56737677	1.00[AFR][1000 genomes]
rs56944863	1.00[AFR][1000 genomes]
rs57057766	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58215103	1.00[AFR][1000 genomes]
rs58243774	0.84[AFR][1000 genomes]
rs58297866	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58447292	1.00[AFR][1000 genomes]
rs58496340	1.00[AFR][1000 genomes]
rs58574914	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58960897	1.00[AFR][1000 genomes]
rs59196614	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59594201	1.00[AFR][1000 genomes]
rs60009927	1.00[AFR][1000 genomes]
rs60240962	0.91[AFR][1000 genomes]
rs6479568	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019148	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7020933	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7025527	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7037510	0.83[EUR][1000 genomes]
rs7041582	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7045005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746511	1.00[EUR][1000 genomes]
rs72746517	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746526	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746527	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746543	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746570	1.00[ASN][1000 genomes]
rs72746573	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746588	1.00[EUR][1000 genomes]
rs72746590	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72746593	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72746594	1.00[EUR][1000 genomes]
rs72746599	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72747010	1.00[EUR][1000 genomes]
rs72747015	1.00[EUR][1000 genomes]
rs72747018	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747021	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747025	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747047	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72747052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748511	1.00[EUR][1000 genomes]
rs72748513	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748515	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748516	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748519	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748526	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748527	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748528	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748529	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748530	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748531	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748533	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748535	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748538	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748539	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748540	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748542	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748544	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748546	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748547	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748548	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748549	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748550	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748551	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748553	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748555	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748556	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748557	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748558	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748560	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748561	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72748564	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748565	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748566	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748574	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748577	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748578	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748579	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748582	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748586	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748587	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748590	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748591	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748593	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748594	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748599	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748602	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750304	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750306	1.00[EUR][1000 genomes]
rs72750307	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750308	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750309	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750310	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750312	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750313	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750317	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750322	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750323	1.00[EUR][1000 genomes]
rs72750324	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750325	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750326	1.00[EUR][1000 genomes]
rs72750327	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750328	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750329	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750332	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750334	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750337	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750338	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750339	1.00[EUR][1000 genomes]
rs73654269	1.00[AFR][1000 genomes]
rs73654270	1.00[AFR][1000 genomes]
rs73654274	1.00[AFR][1000 genomes]
rs73654285	1.00[AFR][1000 genomes]
rs73654291	1.00[AFR][1000 genomes]
rs73654292	1.00[AFR][1000 genomes]
rs73654293	1.00[AFR][1000 genomes]
rs73654294	1.00[AFR][1000 genomes]
rs73654295	0.92[AFR][1000 genomes]
rs73654296	1.00[AFR][1000 genomes]
rs73654297	1.00[AFR][1000 genomes]
rs73654298	1.00[AFR][1000 genomes]
rs73654299	1.00[AFR][1000 genomes]
rs73654300	1.00[AFR][1000 genomes]
rs73654301	1.00[AFR][1000 genomes]
rs73654302	1.00[AFR][1000 genomes]
rs7465900	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848054	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7850601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864706	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7867380	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97523400-97563800	Weak transcription	Fetal Kidney	kidney
2	chr9:97530200-97563000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:97531600-97563000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:97531600-97563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:97545400-97567200	Weak transcription	Small Intestine	intestine
6	chr9:97545800-97563000	Weak transcription	Adipose Nuclei	Adipose
7	chr9:97545800-97563000	Weak transcription	Gastric	stomach
8	chr9:97545800-97563000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:97545800-97563000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:97545800-97563200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:97545800-97567000	Weak transcription	Fetal Brain Female	brain
12	chr9:97548000-97563000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:97548200-97563600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:97548200-97564800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:97548400-97563200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:97548600-97570400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:97549200-97567800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:97550200-97571200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:97551400-97563000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:97553400-97563000	Weak transcription	Dnd41	blood
21	chr9:97555000-97563000	Weak transcription	Left Ventricle	heart
22	chr9:97555000-97563200	Weak transcription	Right Ventricle	heart
23	chr9:97555200-97563000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:97555200-97563000	Weak transcription	Lung	lung
25	chr9:97555200-97563000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr9:97555400-97563000	Weak transcription	Spleen	Spleen
27	chr9:97555800-97563000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:97556600-97563000	Weak transcription	Fetal Stomach	stomach
29	chr9:97556600-97563400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:97556800-97575800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:97557000-97563200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:97557200-97563000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr9:97557400-97563000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr9:97557400-97566800	Weak transcription	Fetal Brain Male	brain
35	chr9:97557400-97567400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:97557600-97563000	Weak transcription	Thymus	Thymus
37	chr9:97557800-97563000	Weak transcription	Liver	Liver
38	chr9:97558000-97563000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:97558000-97563000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr9:97558200-97563000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr9:97558600-97563000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:97558600-97563000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:97558600-97563000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:97558800-97563000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:97558800-97563000	Weak transcription	Esophagus	oesophagus
46	chr9:97559000-97563200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr9:97559400-97563000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:97559400-97563200	Weak transcription	Fetal Lung	lung
49	chr9:97560400-97563600	Enhancers	Stomach Mucosa	stomach
50	chr9:97560400-97570000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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