Variant report

Variant	rs59594201
Chromosome Location	chr9:97609912-97609913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97609417..97611385-chr9:97614090..97618041,3	MCF-7	breast:
2	chr9:97609861..97611961-chr9:97613385..97615426,2	MCF-7	breast:
3	chr9:97605983..97614028-chr9:97679391..97685424,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf118-1	chr9:97608191-97616025	refGeneNc_2054_NR_023390

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

rs_ID	r²[population]
rs55737548	0.85[AFR][1000 genomes]
rs55770541	1.00[AFR][1000 genomes]
rs55791673	1.00[AFR][1000 genomes]
rs55803034	1.00[AFR][1000 genomes]
rs56278112	1.00[AFR][1000 genomes]
rs56278300	1.00[AFR][1000 genomes]
rs56339551	1.00[AFR][1000 genomes]
rs56401778	1.00[AFR][1000 genomes]
rs56737677	1.00[AFR][1000 genomes]
rs56944863	1.00[AFR][1000 genomes]
rs57057766	1.00[AFR][1000 genomes]
rs58215103	1.00[AFR][1000 genomes]
rs58243774	0.84[AFR][1000 genomes]
rs58447292	1.00[AFR][1000 genomes]
rs58496340	1.00[AFR][1000 genomes]
rs58960897	1.00[AFR][1000 genomes]
rs60009927	1.00[AFR][1000 genomes]
rs60240962	0.91[AFR][1000 genomes]
rs72746517	1.00[AFR][1000 genomes]
rs72746526	1.00[AFR][1000 genomes]
rs72746527	1.00[AFR][1000 genomes]
rs72746543	1.00[AFR][1000 genomes]
rs72747021	0.84[AFR][1000 genomes]
rs73654269	1.00[AFR][1000 genomes]
rs73654270	1.00[AFR][1000 genomes]
rs73654274	1.00[AFR][1000 genomes]
rs73654285	1.00[AFR][1000 genomes]
rs73654291	1.00[AFR][1000 genomes]
rs73654292	1.00[AFR][1000 genomes]
rs73654293	1.00[AFR][1000 genomes]
rs73654294	1.00[AFR][1000 genomes]
rs73654295	0.92[AFR][1000 genomes]
rs73654296	1.00[AFR][1000 genomes]
rs73654297	1.00[AFR][1000 genomes]
rs73654298	1.00[AFR][1000 genomes]
rs73654299	1.00[AFR][1000 genomes]
rs73654300	1.00[AFR][1000 genomes]
rs73654301	1.00[AFR][1000 genomes]
rs73654302	1.00[AFR][1000 genomes]
rs7465900	1.00[AFR][1000 genomes]

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
3	chr9:97590600-97616000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:97602400-97616000	Weak transcription	Fetal Intestine Small	intestine
5	chr9:97602400-97620200	Weak transcription	GM12878-XiMat	blood
6	chr9:97602400-97622200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:97603000-97612600	Weak transcription	Primary T cells from cord blood	blood
8	chr9:97603000-97614600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:97603200-97624600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:97605600-97622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:97605800-97621800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:97605800-97626000	Weak transcription	Right Atrium	heart
13	chr9:97606000-97612600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:97608800-97610600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:97609000-97610200	Enhancers	HSMM	muscle
16	chr9:97609000-97610600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr9:97609000-97611400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:97609000-97612000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:97609200-97610600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr9:97609200-97610600	Enhancers	Osteobl	bone
21	chr9:97609200-97611400	Enhancers	HSMMtube	muscle
22	chr9:97609400-97610000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:97609400-97610000	Enhancers	Pancreas	Pancrea
24	chr9:97609400-97610200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:97609400-97610200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr9:97609400-97610400	Enhancers	Esophagus	oesophagus
27	chr9:97609400-97610400	Enhancers	Stomach Mucosa	stomach
28	chr9:97609400-97610400	Enhancers	A549	lung
29	chr9:97609400-97610400	Enhancers	Hela-S3	cervix
30	chr9:97609400-97610400	Enhancers	HUVEC	blood vessel
31	chr9:97609400-97610400	Enhancers	NHDF-Ad	bronchial
32	chr9:97609400-97610600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:97609400-97610600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:97609400-97610600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:97609400-97610600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr9:97609400-97610600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:97609400-97610600	Enhancers	NH-A	brain
38	chr9:97609600-97610200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:97609600-97610400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:97609600-97610400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr9:97609600-97610400	Enhancers	Fetal Kidney	kidney
42	chr9:97609600-97610400	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr9:97609600-97610400	Enhancers	HMEC	breast
44	chr9:97609600-97610400	Enhancers	NHEK	skin
45	chr9:97609600-97610600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:97609600-97610600	Enhancers	NHLF	lung
47	chr9:97609600-97611200	Enhancers	Primary hematopoietic stem cells	blood
48	chr9:97609800-97610200	Enhancers	Brain Anterior Caudate	brain
49	chr9:97609800-97610200	Enhancers	HepG2	liver
50	chr9:97609800-97610400	Enhancers	Skeletal Muscle Male	skeletal muscle

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