Variant report

Variant	rs56191928
Chromosome Location	chr9:97573086-97573087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97562492..97588737-chr9:97670126..97691056,102	MCF-7	breast:
2	chr9:97572097..97590438-chr9:97672990..97690806,63	MCF-7	breast:
3	chr9:97544916..97545819-chr9:97573036..97574008,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 175 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10512252	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12682754	1.00[EUR][1000 genomes]
rs12683036	0.86[ASN][1000 genomes]
rs12683213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684072	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684117	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12684139	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684154	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684461	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684470	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12685042	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12685623	1.00[ASN][1000 genomes]
rs12685907	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12686277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905557	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911801	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911802	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911817	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911820	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911821	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911826	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911846	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1806996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34330897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847309	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3847310	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3886567	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55692018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55737548	0.85[ASN][1000 genomes]
rs55770541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55782932	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55791673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55793565	1.00[EUR][1000 genomes]
rs55814456	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55884189	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55941337	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55946331	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55949944	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55961278	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55999562	0.83[EUR][1000 genomes]
rs56044075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56048239	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56160214	0.86[ASN][1000 genomes]
rs56242694	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56255048	0.86[ASN][1000 genomes]
rs56278112	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56319051	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56328305	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56330504	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57057766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58297866	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58574914	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59196614	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479568	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019148	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7020933	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7025527	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7037510	0.83[EUR][1000 genomes]
rs7041582	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7045005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746511	1.00[EUR][1000 genomes]
rs72746517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746570	1.00[ASN][1000 genomes]
rs72746573	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746588	1.00[EUR][1000 genomes]
rs72746590	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72746593	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72746594	1.00[EUR][1000 genomes]
rs72746599	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72747010	1.00[EUR][1000 genomes]
rs72747015	1.00[EUR][1000 genomes]
rs72747018	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747021	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747025	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747047	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72747052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748511	1.00[EUR][1000 genomes]
rs72748513	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748515	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748516	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748519	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748526	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748527	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748528	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748529	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748530	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748531	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748533	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748535	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748538	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748539	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748540	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748542	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748544	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748546	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748547	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748548	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748549	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748550	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748551	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748553	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748555	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748556	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748557	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748558	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748560	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748561	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72748564	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748565	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748566	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748574	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748577	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748578	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748579	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748582	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748586	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748587	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748590	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748591	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748593	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748594	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748599	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748602	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750304	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750306	1.00[EUR][1000 genomes]
rs72750307	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750308	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750309	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750310	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750312	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750313	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750317	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750322	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750323	1.00[EUR][1000 genomes]
rs72750324	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750325	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750326	1.00[EUR][1000 genomes]
rs72750327	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750328	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750329	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750332	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750334	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750337	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750338	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750339	1.00[EUR][1000 genomes]
rs7465900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848054	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7850601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864706	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7867380	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97556800-97575800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:97563400-97584200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:97563600-97594400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr9:97563800-97573400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:97563800-97573800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:97563800-97574600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:97563800-97579600	Weak transcription	Gastric	stomach
8	chr9:97563800-97584200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:97564000-97574400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr9:97564000-97574400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:97564000-97574600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:97564000-97580000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr9:97564000-97589200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:97564200-97580400	Weak transcription	K562	blood
15	chr9:97565200-97587000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:97565400-97584200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:97567400-97593400	Weak transcription	Thymus	Thymus
18	chr9:97567600-97579400	Weak transcription	Pancreas	Pancrea
19	chr9:97568200-97575800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:97568600-97581400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:97568600-97589000	Weak transcription	Liver	Liver
22	chr9:97568800-97573800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:97568800-97574400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:97568800-97581400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:97568800-97581400	Weak transcription	Fetal Brain Male	brain
26	chr9:97568800-97586800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:97569000-97574400	Weak transcription	NHLF	lung
28	chr9:97569000-97575400	Weak transcription	Fetal Brain Female	brain
29	chr9:97569000-97580200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:97569000-97583800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr9:97569000-97584200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr9:97569000-97584200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr9:97569200-97574200	Strong transcription	Fetal Intestine Large	intestine
34	chr9:97569200-97574400	Strong transcription	Primary T cells from cord blood	blood
35	chr9:97569200-97581200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr9:97569200-97586400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:97569200-97589000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr9:97569400-97574200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:97569400-97574200	Weak transcription	NHEK	skin
40	chr9:97569400-97574600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr9:97569400-97574600	Weak transcription	NHDF-Ad	bronchial
42	chr9:97569400-97579400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr9:97569400-97579400	Weak transcription	Ovary	ovary
44	chr9:97569400-97581200	Weak transcription	Stomach Mucosa	stomach
45	chr9:97569400-97581400	Weak transcription	Small Intestine	intestine
46	chr9:97569400-97587600	Weak transcription	Brain Germinal Matrix	brain
47	chr9:97569400-97589600	Weak transcription	Fetal Thymus	thymus
48	chr9:97569600-97573400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr9:97569600-97573600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:97569600-97579400	Weak transcription	Brain Substantia Nigra	brain

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