Variant report

Variant	rs72746541
Chromosome Location	chr9:97566995-97566996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97563933..97571351-chr9:97576672..97582632,18	MCF-7	breast:
2	chr9:97561090..97565349-chr9:97565674..97569027,3	MCF-7	breast:
3	chr9:97565914..97571490-chr9:97674207..97687450,22	MCF-7	breast:
4	chr9:97432815..97434625-chr9:97564258..97567055,2	MCF-7	breast:
5	chr9:97566500..97569295-chr9:97687773..97689488,3	MCF-7	breast:
6	chr9:97544027..97547289-chr9:97566089..97570297,6	MCF-7	breast:
7	chr9:97562492..97588737-chr9:97670126..97691056,102	MCF-7	breast:
8	chr9:97566294..97568352-chr9:97767960..97769924,2	MCF-7	breast:
9	chr9:97564303..97567097-chr9:97855435..97857190,2	MCF-7	breast:
10	chr9:97563515..97567876-chr9:97764725..97767741,5	MCF-7	breast:
11	chr9:97564695..97567248-chr9:97774621..97777227,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 175 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10512252	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12682754	1.00[EUR][1000 genomes]
rs12683036	0.86[ASN][1000 genomes]
rs12683213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684072	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684117	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12684139	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684154	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684461	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684470	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12685042	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12685623	1.00[ASN][1000 genomes]
rs12685907	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12686277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905557	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911801	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911802	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911817	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911820	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911821	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911826	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911846	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1806996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34330897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847309	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3847310	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3886567	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55692018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55737548	0.85[ASN][1000 genomes]
rs55770541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55782932	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55791673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55793565	1.00[EUR][1000 genomes]
rs55814456	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55884189	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55941337	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55946331	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55949944	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55961278	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55999562	0.83[EUR][1000 genomes]
rs56044075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56048239	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56160214	0.86[ASN][1000 genomes]
rs56191928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56242694	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56255048	0.86[ASN][1000 genomes]
rs56278112	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56319051	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56328305	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56330504	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57057766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58297866	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58574914	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59196614	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479568	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019148	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7020933	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7025527	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7037510	0.83[EUR][1000 genomes]
rs7041582	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7045005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746511	1.00[EUR][1000 genomes]
rs72746517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746570	1.00[ASN][1000 genomes]
rs72746573	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746588	1.00[EUR][1000 genomes]
rs72746590	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72746593	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72746594	1.00[EUR][1000 genomes]
rs72746599	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72747010	1.00[EUR][1000 genomes]
rs72747015	1.00[EUR][1000 genomes]
rs72747018	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747021	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72747023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747025	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747047	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72747052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748511	1.00[EUR][1000 genomes]
rs72748513	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748515	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748516	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748519	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748526	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748527	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748528	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748529	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748530	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748531	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748533	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748535	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748538	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748539	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748540	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748542	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748544	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748546	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748547	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748548	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748549	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748550	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748551	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748553	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748555	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748556	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748557	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748558	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748560	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748561	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72748564	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748565	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748566	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748574	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748577	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748578	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748579	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748582	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748586	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748587	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748590	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748591	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748593	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748594	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748599	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72748602	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750304	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750306	1.00[EUR][1000 genomes]
rs72750307	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750308	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750309	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750310	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750312	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750313	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750317	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750322	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750323	1.00[EUR][1000 genomes]
rs72750324	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750325	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750326	1.00[EUR][1000 genomes]
rs72750327	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750328	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750329	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750332	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750334	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750337	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750338	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750339	1.00[EUR][1000 genomes]
rs7465900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848054	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7850601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864706	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7867380	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97545400-97567200	Weak transcription	Small Intestine	intestine
2	chr9:97545800-97567000	Weak transcription	Fetal Brain Female	brain
3	chr9:97548600-97570400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:97549200-97567800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr9:97550200-97571200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:97556800-97575800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:97557400-97567400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr9:97560400-97570000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:97561000-97568200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:97561200-97568200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:97562000-97567600	Strong transcription	Primary T cells from cord blood	blood
12	chr9:97562000-97572800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:97562200-97571200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr9:97562400-97567200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:97563400-97584200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:97563600-97568000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:97563600-97569200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:97563600-97569600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:97563600-97594400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:97563800-97567000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:97563800-97567000	Weak transcription	HUVEC	blood vessel
22	chr9:97563800-97567200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr9:97563800-97567200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:97563800-97567200	Weak transcription	Pancreas	Pancrea
25	chr9:97563800-97567200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:97563800-97567200	Weak transcription	Right Atrium	heart
27	chr9:97563800-97567200	Weak transcription	Spleen	Spleen
28	chr9:97563800-97567400	Weak transcription	Colonic Mucosa	Colon
29	chr9:97563800-97568000	Weak transcription	Liver	Liver
30	chr9:97563800-97568000	Weak transcription	Ovary	ovary
31	chr9:97563800-97568800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr9:97563800-97569200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:97563800-97569400	Weak transcription	Right Ventricle	heart
34	chr9:97563800-97569600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr9:97563800-97569800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr9:97563800-97569800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:97563800-97569800	Weak transcription	Fetal Stomach	stomach
38	chr9:97563800-97570200	Weak transcription	Lung	lung
39	chr9:97563800-97570400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:97563800-97570800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr9:97563800-97573400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr9:97563800-97573800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr9:97563800-97574600	Weak transcription	Colon Smooth Muscle	Colon
44	chr9:97563800-97579600	Weak transcription	Gastric	stomach
45	chr9:97563800-97584200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr9:97564000-97567200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr9:97564000-97567200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr9:97564000-97567400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:97564000-97567800	Weak transcription	Adipose Nuclei	Adipose
50	chr9:97564000-97568000	Enhancers	Brain Hippocampus Middle	brain

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