Variant report

Variant	rs55999562
Chromosome Location	chr9:97477767-97477768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97476575..97480108-chr9:97483463..97488738,5	MCF-7	breast:

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs12683213	0.83[EUR][1000 genomes]
rs12684117	0.83[EUR][1000 genomes]
rs12684139	0.83[EUR][1000 genomes]
rs12684154	0.83[EUR][1000 genomes]
rs12684461	0.83[EUR][1000 genomes]
rs12684470	0.83[EUR][1000 genomes]
rs12685907	0.83[EUR][1000 genomes]
rs12686277	0.83[EUR][1000 genomes]
rs16905557	0.83[EUR][1000 genomes]
rs16911801	0.83[EUR][1000 genomes]
rs16911802	0.83[EUR][1000 genomes]
rs16911817	0.83[EUR][1000 genomes]
rs16911820	0.83[EUR][1000 genomes]
rs16911821	0.83[EUR][1000 genomes]
rs16911826	0.83[EUR][1000 genomes]
rs16911846	0.83[EUR][1000 genomes]
rs1806996	0.83[EUR][1000 genomes]
rs34330897	0.83[EUR][1000 genomes]
rs3847309	0.83[EUR][1000 genomes]
rs3847310	0.83[EUR][1000 genomes]
rs3886567	0.83[EUR][1000 genomes]
rs55692018	0.83[EUR][1000 genomes]
rs55770541	0.83[EUR][1000 genomes]
rs55782932	0.83[EUR][1000 genomes]
rs55791673	0.83[EUR][1000 genomes]
rs55793565	0.83[EUR][1000 genomes]
rs55814456	0.83[EUR][1000 genomes]
rs55884189	0.83[EUR][1000 genomes]
rs55941337	0.83[EUR][1000 genomes]
rs55946331	0.83[EUR][1000 genomes]
rs55949944	0.83[EUR][1000 genomes]
rs55961278	0.83[EUR][1000 genomes]
rs56044075	0.83[EUR][1000 genomes]
rs56048239	0.83[EUR][1000 genomes]
rs56191928	0.83[EUR][1000 genomes]
rs56242694	0.83[EUR][1000 genomes]
rs56278112	0.83[EUR][1000 genomes]
rs56319051	0.83[EUR][1000 genomes]
rs56328305	0.83[EUR][1000 genomes]
rs56330504	0.83[EUR][1000 genomes]
rs57057766	0.83[EUR][1000 genomes]
rs57771585	1.00[AMR][1000 genomes]
rs58297866	0.83[EUR][1000 genomes]
rs58574914	0.83[EUR][1000 genomes]
rs59196614	0.83[EUR][1000 genomes]
rs60234052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6479568	0.83[EUR][1000 genomes]
rs7019148	0.83[EUR][1000 genomes]
rs7020933	0.83[EUR][1000 genomes]
rs7025527	0.83[EUR][1000 genomes]
rs7037510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041582	0.83[EUR][1000 genomes]
rs7045005	0.83[EUR][1000 genomes]
rs72746511	0.83[EUR][1000 genomes]
rs72746517	0.83[EUR][1000 genomes]
rs72746519	0.83[EUR][1000 genomes]
rs72746526	0.83[EUR][1000 genomes]
rs72746527	0.83[EUR][1000 genomes]
rs72746532	0.83[EUR][1000 genomes]
rs72746534	0.83[EUR][1000 genomes]
rs72746536	0.83[EUR][1000 genomes]
rs72746541	0.83[EUR][1000 genomes]
rs72746543	0.83[EUR][1000 genomes]
rs72746550	0.83[EUR][1000 genomes]
rs72746556	0.83[EUR][1000 genomes]
rs72746558	0.83[EUR][1000 genomes]
rs72746559	0.83[EUR][1000 genomes]
rs72746560	0.83[EUR][1000 genomes]
rs72746561	0.83[EUR][1000 genomes]
rs72746562	0.83[EUR][1000 genomes]
rs72746567	0.83[EUR][1000 genomes]
rs72746568	0.83[EUR][1000 genomes]
rs72746573	0.83[EUR][1000 genomes]
rs72746574	0.83[EUR][1000 genomes]
rs72746588	0.83[EUR][1000 genomes]
rs72746590	0.83[EUR][1000 genomes]
rs72746593	0.83[EUR][1000 genomes]
rs72746594	0.83[EUR][1000 genomes]
rs72746599	0.83[EUR][1000 genomes]
rs72747010	0.83[EUR][1000 genomes]
rs72747015	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747018	0.83[EUR][1000 genomes]
rs72747021	0.83[EUR][1000 genomes]
rs72747023	0.83[EUR][1000 genomes]
rs72747025	0.83[EUR][1000 genomes]
rs72747030	0.83[EUR][1000 genomes]
rs72747035	0.83[EUR][1000 genomes]
rs72747037	0.83[EUR][1000 genomes]
rs72747047	0.83[EUR][1000 genomes]
rs72747052	0.83[EUR][1000 genomes]
rs72747058	0.83[EUR][1000 genomes]
rs72748511	0.83[EUR][1000 genomes]
rs72748513	0.83[EUR][1000 genomes]
rs72748515	0.83[EUR][1000 genomes]
rs72748516	0.83[EUR][1000 genomes]
rs72748519	0.83[EUR][1000 genomes]
rs72748526	0.83[EUR][1000 genomes]
rs72748527	0.83[EUR][1000 genomes]
rs72748528	0.83[EUR][1000 genomes]
rs72748529	0.83[EUR][1000 genomes]
rs72748530	0.83[EUR][1000 genomes]
rs72748531	0.83[EUR][1000 genomes]
rs72748533	0.83[EUR][1000 genomes]
rs72748535	0.83[EUR][1000 genomes]
rs72748538	0.83[EUR][1000 genomes]
rs72748539	0.83[EUR][1000 genomes]
rs72748540	0.83[EUR][1000 genomes]
rs72748542	0.83[EUR][1000 genomes]
rs72748544	0.83[EUR][1000 genomes]
rs72748546	0.83[EUR][1000 genomes]
rs72748547	0.83[EUR][1000 genomes]
rs72748548	0.83[EUR][1000 genomes]
rs72748549	0.83[EUR][1000 genomes]
rs72748550	0.83[EUR][1000 genomes]
rs72748551	0.83[EUR][1000 genomes]
rs72748553	0.83[EUR][1000 genomes]
rs72748555	0.83[EUR][1000 genomes]
rs72748556	0.83[EUR][1000 genomes]
rs72748557	0.83[EUR][1000 genomes]
rs72748558	0.83[EUR][1000 genomes]
rs72748560	0.83[EUR][1000 genomes]
rs72748561	0.83[EUR][1000 genomes]
rs72748564	0.83[EUR][1000 genomes]
rs72748565	0.83[EUR][1000 genomes]
rs72748566	0.83[EUR][1000 genomes]
rs72748574	0.83[EUR][1000 genomes]
rs72748577	0.83[EUR][1000 genomes]
rs72748578	0.83[EUR][1000 genomes]
rs72748579	0.83[EUR][1000 genomes]
rs72748582	0.83[EUR][1000 genomes]
rs72748586	0.83[EUR][1000 genomes]
rs72748587	0.83[EUR][1000 genomes]
rs72748590	0.83[EUR][1000 genomes]
rs72748591	0.83[EUR][1000 genomes]
rs72748593	0.83[EUR][1000 genomes]
rs72748594	0.83[EUR][1000 genomes]
rs72748599	0.83[EUR][1000 genomes]
rs72748602	0.83[EUR][1000 genomes]
rs72750304	0.83[EUR][1000 genomes]
rs72750306	0.83[EUR][1000 genomes]
rs72750307	0.83[EUR][1000 genomes]
rs72750308	0.83[EUR][1000 genomes]
rs72750309	0.83[EUR][1000 genomes]
rs72750310	0.83[EUR][1000 genomes]
rs72750312	0.83[EUR][1000 genomes]
rs72750313	0.83[EUR][1000 genomes]
rs72750317	0.83[EUR][1000 genomes]
rs72750322	0.83[EUR][1000 genomes]
rs72750323	0.83[EUR][1000 genomes]
rs72750324	0.83[EUR][1000 genomes]
rs72750325	0.83[EUR][1000 genomes]
rs72750326	0.83[EUR][1000 genomes]
rs72750327	0.83[EUR][1000 genomes]
rs73654264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654267	1.00[AMR][1000 genomes]
rs7465900	0.83[EUR][1000 genomes]
rs7848054	0.83[EUR][1000 genomes]
rs7850601	0.83[EUR][1000 genomes]
rs7850680	0.83[EUR][1000 genomes]
rs7867380	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97476200-97480000	Weak transcription	Placenta	Placenta
2	chr9:97476600-97477800	Enhancers	Fetal Brain Male	brain
3	chr9:97476800-97480200	Weak transcription	NHDF-Ad	bronchial
4	chr9:97477600-97478400	Weak transcription	HepG2	liver

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