Variant report

Variant	rs41285023
Chromosome Location	chr6:143929450-143929451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55753101	1.00[AFR][1000 genomes]
rs62427370	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62429083	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62429088	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:143919800-143930400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:143919800-143930600	Weak transcription	Stomach Mucosa	stomach
5	chr6:143920000-143935200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:143920200-143935000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:143920600-143934800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:143926800-143929600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:143928200-143929600	Enhancers	Fetal Heart	heart
10	chr6:143928200-143929600	Enhancers	Fetal Lung	lung
11	chr6:143928400-143929600	Enhancers	Aorta	Aorta
12	chr6:143928400-143930600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr6:143928600-143934400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:143928800-143929600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:143929000-143929600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:143929000-143929600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:143929000-143929600	Enhancers	Fetal Muscle Leg	muscle
18	chr6:143929000-143929600	Enhancers	Ovary	ovary
19	chr6:143929000-143929800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:143929000-143930000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:143929000-143930400	Active TSS	Stomach Smooth Muscle	stomach
22	chr6:143929200-143929600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:143929200-143929600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:143929200-143929600	Enhancers	Esophagus	oesophagus
25	chr6:143929200-143929600	Enhancers	Left Ventricle	heart
26	chr6:143929200-143929600	Enhancers	NH-A	brain
27	chr6:143929200-143929800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:143929200-143929800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:143929200-143929800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:143929200-143929800	Active TSS	Brain Angular Gyrus	brain
31	chr6:143929200-143929800	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr6:143929200-143929800	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr6:143929200-143929800	Active TSS	Fetal Brain Female	brain
34	chr6:143929200-143930000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr6:143929200-143930000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:143929200-143930200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:143929200-143930400	Active TSS	Brain Cingulate Gyrus	brain
38	chr6:143929200-143930400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:143929200-143930600	Active TSS	Placenta	Placenta
40	chr6:143929200-143935400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:143929400-143929800	Active TSS	Brain Hippocampus Middle	brain
42	chr6:143929400-143930400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:143929400-143930400	Active TSS	Right Atrium	heart
44	chr6:143929400-143930800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:143929400-143934800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:143929400-143935000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:143929400-143935200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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