The 2.0 version of rSNPBase

Variant report

Variant rs62429088
Chromosome Location chr6:143867388-143867389
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143859400-143871200 Weak transcription Pancreas Pancrea
2 chr6:143859400-143875600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr6:143859400-143875600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr6:143859400-143876000 Weak transcription Primary hematopoietic stem cells blood
5 chr6:143859600-143868600 Weak transcription Primary B cells from cord blood blood
6 chr6:143861800-143870600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr6:143862800-143867400 Enhancers Stomach Mucosa stomach
8 chr6:143863200-143869000 Enhancers Fetal Intestine Large intestine
9 chr6:143863200-143870200 Weak transcription Small Intestine intestine
10 chr6:143863400-143870200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr6:143863800-143870200 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr6:143864800-143867800 Weak transcription Gastric stomach
13 chr6:143865000-143867400 Enhancers GM12878-XiMat blood
14 chr6:143865000-143875600 Weak transcription Primary hematopoietic stem cells short term culture blood
15 chr6:143865400-143877800 Weak transcription Primary monocytes fromperipheralblood blood
16 chr6:143865600-143874600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr6:143865800-143867600 Enhancers NHEK skin
18 chr6:143865800-143876000 Weak transcription Fetal Heart heart
19 chr6:143866200-143867600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr6:143866200-143870000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr6:143866400-143867400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
22 chr6:143866400-143867600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr6:143866400-143867600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
24 chr6:143866400-143867600 Flanking Active TSS Primary T helper cells PMA-I stimulated --
25 chr6:143866400-143867600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
26 chr6:143866400-143867600 Enhancers K562 blood
27 chr6:143866400-143868000 Enhancers HepG2 liver
28 chr6:143866600-143867400 Enhancers Primary mononuclear cells fromperipheralblood Blood
29 chr6:143866600-143867400 Strong transcription Monocytes-CD14+_RO01746 blood
30 chr6:143866600-143867600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr6:143866600-143867600 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
32 chr6:143866800-143867800 Weak transcription Primary T cells fromperipheralblood blood
33 chr6:143866800-143867800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr6:143866800-143869600 Weak transcription Esophagus oesophagus
35 chr6:143866800-143904600 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr6:143867000-143867400 Active TSS Rectal Mucosa Donor 29 rectum
37 chr6:143867000-143867600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr6:143867000-143867600 Flanking Active TSS Primary T cells from cord blood blood
39 chr6:143867000-143870400 Weak transcription HMEC breast
40 chr6:143867200-143867600 Active TSS Primary T helper naive cells fromperipheralblood blood
41 chr6:143867200-143867600 Active TSS Duodenum Mucosa Duodenum
42 chr6:143867200-143868200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
43 chr6:143867200-143868400 Enhancers Primary T killer memory cells from peripheral blood blood
44 chr6:143867200-143868800 Enhancers Primary T helper 17 cells PMA-I stimulated --
45 chr6:143867200-143869200 Enhancers Fetal Intestine Small intestine
46 chr6:143867200-143869800 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr6:143867200-143875800 Enhancers Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015