The 2.0 version of rSNPBase

Variant report

Variant rs41289432
Chromosome Location chr1:62586449-62586450
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62508200-62628400 Weak transcription Colonic Mucosa Colon
2 chr1:62532600-62587600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:62536200-62619400 Weak transcription Rectal Smooth Muscle rectum
4 chr1:62542400-62586800 Weak transcription NHEK skin
5 chr1:62542400-62587400 Weak transcription HMEC breast
6 chr1:62545400-62606800 Weak transcription Placenta Amnion Placenta Amnion
7 chr1:62548200-62594000 Weak transcription Stomach Smooth Muscle stomach
8 chr1:62548400-62629800 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:62550200-62607800 Weak transcription Right Ventricle heart
10 chr1:62551800-62594200 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:62551800-62614000 Weak transcription Primary T cells from cord blood blood
12 chr1:62553200-62594200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:62554200-62614000 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr1:62555000-62589800 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:62555000-62594200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr1:62556000-62594200 Weak transcription Left Ventricle heart
17 chr1:62563600-62617400 Weak transcription Brain Anterior Caudate brain
18 chr1:62566000-62593600 Weak transcription Primary T helper cells fromperipheralblood blood
19 chr1:62566200-62594400 Weak transcription Aorta Aorta
20 chr1:62566200-62603400 Weak transcription Esophagus oesophagus
21 chr1:62566200-62604400 Weak transcription Lung lung
22 chr1:62566200-62614000 Weak transcription Adipose Nuclei Adipose
23 chr1:62566800-62608000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:62567200-62594200 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr1:62569800-62594400 Weak transcription H1 Cell Line embryonic stem cell
26 chr1:62570000-62594400 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr1:62570200-62607800 Weak transcription iPS-20b Cell Line embryonic stem cell
28 chr1:62575000-62587200 Strong transcription Breast Myoepithelial Primary Cells Breast
29 chr1:62575200-62608000 Weak transcription Fetal Kidney kidney
30 chr1:62576600-62593800 Weak transcription Ovary ovary
31 chr1:62576600-62594200 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr1:62576600-62596800 Weak transcription Fetal Stomach stomach
33 chr1:62576600-62618000 Weak transcription Psoas Muscle Psoas
34 chr1:62576800-62607800 Weak transcription H9 Cell Line embryonic stem cell
35 chr1:62580000-62589800 Weak transcription Fetal Intestine Small intestine
36 chr1:62580000-62594400 Weak transcription Gastric stomach
37 chr1:62580000-62611600 Weak transcription Pancreas Pancrea
38 chr1:62580200-62617200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
39 chr1:62580400-62588000 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr1:62580600-62594400 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr1:62582200-62588000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr1:62582400-62594400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:62582600-62594600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr1:62583000-62593600 Weak transcription Liver Liver
45 chr1:62583400-62587800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr1:62583800-62587000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr1:62584000-62594200 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr1:62584200-62594000 Weak transcription Primary T helper cells PMA-I stimulated --
49 chr1:62584400-62594600 Weak transcription Duodenum Mucosa Duodenum
50 chr1:62584600-62586600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015