The 2.0 version of rSNPBase

Variant report

Variant rs74076548
Chromosome Location chr1:62576814-62576815
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62508200-62628400 Weak transcription Colonic Mucosa Colon
2 chr1:62532600-62587600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:62536200-62619400 Weak transcription Rectal Smooth Muscle rectum
4 chr1:62542400-62586800 Weak transcription NHEK skin
5 chr1:62542400-62587400 Weak transcription HMEC breast
6 chr1:62545400-62606800 Weak transcription Placenta Amnion Placenta Amnion
7 chr1:62548200-62594000 Weak transcription Stomach Smooth Muscle stomach
8 chr1:62548400-62629800 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:62550200-62607800 Weak transcription Right Ventricle heart
10 chr1:62551800-62594200 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:62551800-62614000 Weak transcription Primary T cells from cord blood blood
12 chr1:62553000-62579000 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr1:62553000-62582800 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr1:62553200-62594200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr1:62553400-62579600 Weak transcription Pancreas Pancrea
16 chr1:62553600-62579600 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr1:62554200-62614000 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr1:62554400-62581600 Weak transcription Duodenum Mucosa Duodenum
19 chr1:62555000-62589800 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:62555000-62594200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr1:62556000-62594200 Weak transcription Left Ventricle heart
22 chr1:62559600-62582000 Weak transcription Liver Liver
23 chr1:62563600-62617400 Weak transcription Brain Anterior Caudate brain
24 chr1:62566000-62593600 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr1:62566200-62579600 Weak transcription Gastric stomach
26 chr1:62566200-62582200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr1:62566200-62594400 Weak transcription Aorta Aorta
28 chr1:62566200-62603400 Weak transcription Esophagus oesophagus
29 chr1:62566200-62604400 Weak transcription Lung lung
30 chr1:62566200-62614000 Weak transcription Adipose Nuclei Adipose
31 chr1:62566400-62578000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:62566600-62577800 Weak transcription Fetal Intestine Small intestine
33 chr1:62566800-62608000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr1:62567200-62594200 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr1:62569800-62594400 Weak transcription H1 Cell Line embryonic stem cell
36 chr1:62570000-62594400 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr1:62570200-62607800 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr1:62572600-62578000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:62574800-62577200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:62575000-62587200 Strong transcription Breast Myoepithelial Primary Cells Breast
41 chr1:62575200-62608000 Weak transcription Fetal Kidney kidney
42 chr1:62576600-62582600 Weak transcription Fetal Intestine Large intestine
43 chr1:62576600-62593800 Weak transcription Ovary ovary
44 chr1:62576600-62594200 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr1:62576600-62596800 Weak transcription Fetal Stomach stomach
46 chr1:62576600-62618000 Weak transcription Psoas Muscle Psoas
47 chr1:62576800-62577000 Enhancers ES-I3 Cell Line embryonic stem cell
48 chr1:62576800-62607800 Weak transcription H9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015