Variant report

Variant	rs41294595
Chromosome Location	chr10:6030076-6030077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6019033..6020826-chr10:6028167..6030324,2	MCF-7	breast:
2	chr10:6015843..6022615-chr10:6026260..6030746,8	K562	blood:
3	chr10:6023454..6025587-chr10:6029284..6031828,3	K562	blood:
4	chr10:6018121..6020980-chr10:6028321..6030840,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12722596	1.00[AFR][1000 genomes]
rs12722610	1.00[AFR][1000 genomes]
rs1323653	1.00[AFR][1000 genomes]
rs41293983	1.00[AFR][1000 genomes]
rs41293989	1.00[AFR][1000 genomes]
rs41294153	1.00[AFR][1000 genomes]
rs41294601	1.00[AMR][1000 genomes]
rs41294609	1.00[AFR][1000 genomes]
rs41294625	1.00[AFR][1000 genomes]
rs41294627	1.00[AFR][1000 genomes]
rs41294655	1.00[AFR][1000 genomes]
rs41295101	1.00[AMR][1000 genomes]
rs41295261	1.00[AFR][1000 genomes]
rs41295265	1.00[AFR][1000 genomes]
rs62626308	1.00[AFR][1000 genomes]
rs7904874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6025400-6032400	Enhancers	Fetal Stomach	stomach
2	chr10:6026400-6041200	Weak transcription	Pancreas	Pancrea
3	chr10:6027600-6031200	Enhancers	Fetal Lung	lung
4	chr10:6029200-6030200	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr10:6029600-6030200	Bivalent/Poised TSS	Fetal Brain Male	brain
6	chr10:6029600-6030200	Enhancers	Small Intestine	intestine
7	chr10:6029600-6030200	Flanking Active TSS	K562	blood
8	chr10:6029600-6030400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:6029600-6030600	Enhancers	Adipose Nuclei	Adipose
10	chr10:6029800-6030200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:6029800-6030200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:6029800-6030200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:6029800-6030200	Enhancers	Ovary	ovary
14	chr10:6029800-6030200	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr10:6029800-6030200	Enhancers	Spleen	Spleen
16	chr10:6029800-6030400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:6029800-6030400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr10:6029800-6030400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:6029800-6030400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:6029800-6030400	Enhancers	Fetal Muscle Leg	muscle
21	chr10:6029800-6030400	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr10:6029800-6030600	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:6029800-6030600	Enhancers	Lung	lung
24	chr10:6030000-6030200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr10:6030000-6030600	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links