Variant report

Variant	rs41295261
Chromosome Location	chr10:5984610-5984611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5977248..5980846-chr10:5983799..5986728,4	K562	blood:
2	chr10:5984527..5986987-chr10:6018100..6019838,2	MCF-7	breast:
3	chr10:5983248..5985908-chr10:6017920..6022464,4	K562	blood:

Variant related genes	Relation type
ENSG00000134470	Chromatin interaction
ENSG00000134452	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12722596	1.00[AFR][1000 genomes]
rs12722610	1.00[AFR][1000 genomes]
rs1323653	1.00[AFR][1000 genomes]
rs41293983	1.00[AFR][1000 genomes]
rs41293989	1.00[AFR][1000 genomes]
rs41294153	1.00[AFR][1000 genomes]
rs41294595	1.00[AFR][1000 genomes]
rs41294609	1.00[AFR][1000 genomes]
rs41294625	1.00[AFR][1000 genomes]
rs41294627	1.00[AFR][1000 genomes]
rs41294655	1.00[AFR][1000 genomes]
rs41295265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62626308	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5952000-5985000	Weak transcription	Stomach Mucosa	stomach
2	chr10:5969600-5987800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:5969600-6012000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:5971400-6013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:5972800-5986800	Weak transcription	Hela-S3	cervix
6	chr10:5973400-5985600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:5977600-5986800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:5978000-5985400	Weak transcription	Fetal Heart	heart
9	chr10:5978600-5985400	Weak transcription	Fetal Kidney	kidney
10	chr10:5978800-5988200	Weak transcription	Fetal Brain Male	brain
11	chr10:5979200-5986800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:5979400-5985400	Weak transcription	Small Intestine	intestine
13	chr10:5980000-5991000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:5980000-6013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:5980200-5985400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:5980200-5987200	Weak transcription	Primary B cells from cord blood	blood
17	chr10:5980200-5987800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:5980400-5985400	Weak transcription	NHDF-Ad	bronchial
19	chr10:5980400-5987800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:5980600-5985600	Weak transcription	Brain Angular Gyrus	brain
21	chr10:5980600-5985800	Weak transcription	Aorta	Aorta
22	chr10:5980600-5987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:5980600-5987400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:5980800-5985400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:5980800-5985400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:5980800-5985400	Weak transcription	Colonic Mucosa	Colon
27	chr10:5980800-5985400	Weak transcription	Fetal Lung	lung
28	chr10:5980800-5985400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:5980800-5985400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:5980800-5985400	Weak transcription	HSMM	muscle
31	chr10:5980800-5985400	Weak transcription	HSMMtube	muscle
32	chr10:5980800-5985600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:5980800-5986400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:5980800-5986600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:5980800-5987400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:5980800-5987400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:5980800-5987400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:5980800-5987400	Weak transcription	Liver	Liver
39	chr10:5980800-5991000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr10:5980800-5994600	Weak transcription	Gastric	stomach
41	chr10:5980800-6017800	Weak transcription	Thymus	Thymus
42	chr10:5981000-5985200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:5981000-5985400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:5981000-5985400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:5981000-5985400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:5981000-5985400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:5981000-5985400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:5981000-5985400	Weak transcription	Brain Anterior Caudate	brain
49	chr10:5981000-5985400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:5981000-5985400	Weak transcription	Duodenum Mucosa	Duodenum

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