Variant report

Variant	rs41295063
Chromosome Location	chr10:6115204-6115205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs41295049	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41295061	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41295065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41295071	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41295081	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41295113	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61839672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6108000-6115600	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:6109400-6115400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:6109400-6117400	Enhancers	Fetal Thymus	thymus
4	chr10:6114000-6116600	Weak transcription	Right Atrium	heart
5	chr10:6114200-6117000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:6114400-6115400	Enhancers	Thymus	Thymus
7	chr10:6114400-6117000	Weak transcription	Lung	lung
8	chr10:6114400-6117200	Weak transcription	Left Ventricle	heart
9	chr10:6114600-6116400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:6114800-6115400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:6115000-6118000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr10:6115000-6124600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:6115200-6115600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:6115200-6115600	Enhancers	GM12878-XiMat	blood
15	chr10:6115200-6116800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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