Variant report

Variant	rs61839672
Chromosome Location	chr10:6111993-6111994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6111484..6113344-chr10:6118338..6121167,2	K562	blood:
2	chr10:6110898..6113071-chr10:6121798..6124143,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs41295049	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41295061	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41295063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41295065	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41295071	0.93[AMR][1000 genomes]
rs41295081	0.87[AMR][1000 genomes]
rs41295113	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6104200-6112600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:6104600-6113600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:6106800-6114800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:6107200-6112000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:6107200-6114800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:6107200-6115000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:6107400-6112000	Enhancers	Adipose Nuclei	Adipose
8	chr10:6107400-6114800	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:6108000-6115600	Enhancers	Primary B cells from peripheral blood	blood
10	chr10:6108600-6112800	Weak transcription	Left Ventricle	heart
11	chr10:6108800-6113400	Weak transcription	Right Atrium	heart
12	chr10:6108800-6113600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:6108800-6114200	Weak transcription	Right Ventricle	heart
14	chr10:6109000-6112600	Weak transcription	Placenta	Placenta
15	chr10:6109400-6115400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:6109400-6117400	Enhancers	Fetal Thymus	thymus
17	chr10:6109600-6113000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:6110200-6112000	Enhancers	GM12878-XiMat	blood
19	chr10:6110600-6112000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:6110800-6113000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr10:6111000-6113800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:6111000-6114600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:6111000-6115000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr10:6111200-6112600	Weak transcription	Spleen	Spleen
25	chr10:6111200-6113000	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:6111200-6113400	Weak transcription	Small Intestine	intestine
27	chr10:6111200-6113600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:6111200-6114800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr10:6111200-6115000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:6111200-6115000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr10:6111400-6114200	Enhancers	Thymus	Thymus
32	chr10:6111400-6115200	Enhancers	Primary B cells from cord blood	blood
33	chr10:6111600-6113400	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:6111600-6114400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:6111600-6115000	Enhancers	Primary T cells from cord blood	blood
36	chr10:6111600-6115000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr10:6111600-6115200	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr10:6111600-6115200	Enhancers	Dnd41	blood
39	chr10:6111800-6112000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:6111800-6112200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:6111800-6112200	Weak transcription	Lung	lung
42	chr10:6111800-6112400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:6111800-6112600	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr10:6111800-6112800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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