Variant report

Variant	rs41295373
Chromosome Location	chr10:6159215-6159216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6149158..6152677-chr10:6155129..6159616,7	K562	blood:
2	chr10:6157094..6159629-chr10:6160136..6162344,2	MCF-7	breast:
3	chr10:6157155..6159705-chr2:70646741..70649494,2	MCF-7	breast:
4	chr10:6159068..6161619-chr16:85498521..85501136,2	MCF-7	breast:
5	chr10:6157111..6159833-chr10:6166707..6168327,2	MCF-7	breast:
6	chr10:6157377..6159891-chr10:6179224..6181720,2	MCF-7	breast:
7	chr10:6158099..6160276-chr10:6162186..6164567,3	K562	blood:

Variant related genes	Relation type
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12241939	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544304	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41295353	0.96[ASN][1000 genomes]
rs66524564	0.92[ASN][1000 genomes]
rs73605992	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73605996	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6138000-6159400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:6138800-6159400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:6140000-6162000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:6140400-6161000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:6142200-6159400	Strong transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:6143200-6159400	Strong transcription	Fetal Muscle Trunk	muscle
7	chr10:6151000-6159400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:6151000-6159600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:6151400-6159400	Strong transcription	Dnd41	blood
10	chr10:6151400-6160000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:6151600-6160000	Strong transcription	Fetal Thymus	thymus
12	chr10:6151800-6159400	Strong transcription	Primary T cells from cord blood	blood
13	chr10:6154400-6159400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:6154400-6166400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:6155200-6162000	Weak transcription	Stomach Mucosa	stomach
16	chr10:6156400-6159400	Enhancers	Fetal Heart	heart
17	chr10:6156800-6159600	Enhancers	HSMMtube	muscle
18	chr10:6156800-6160800	Weak transcription	Fetal Brain Male	brain
19	chr10:6156800-6161400	Weak transcription	Fetal Kidney	kidney
20	chr10:6156800-6161400	Weak transcription	Pancreas	Pancrea
21	chr10:6156800-6162600	Weak transcription	Esophagus	oesophagus
22	chr10:6156800-6162600	Weak transcription	Ovary	ovary
23	chr10:6157000-6159400	Strong transcription	Liver	Liver
24	chr10:6157000-6161400	Weak transcription	Right Ventricle	heart
25	chr10:6157000-6161600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:6157000-6161600	Weak transcription	Right Atrium	heart
27	chr10:6157000-6162000	Weak transcription	Psoas Muscle	Psoas
28	chr10:6157000-6162200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:6157000-6162600	Weak transcription	Small Intestine	intestine
30	chr10:6157000-6164200	Weak transcription	HepG2	liver
31	chr10:6157000-6166400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:6157000-6170800	Weak transcription	Gastric	stomach
33	chr10:6157200-6159800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:6157200-6161400	Weak transcription	Fetal Brain Female	brain
35	chr10:6157200-6161800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:6157600-6159400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:6157600-6159400	Strong transcription	Adipose Nuclei	Adipose
38	chr10:6157600-6159600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:6157600-6161400	Weak transcription	Brain Anterior Caudate	brain
40	chr10:6157600-6161400	Weak transcription	Left Ventricle	heart
41	chr10:6157600-6162000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:6157600-6162600	Weak transcription	Aorta	Aorta
43	chr10:6157600-6162800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr10:6157600-6162800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:6157600-6162800	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:6157600-6162800	Weak transcription	Fetal Stomach	stomach
47	chr10:6157600-6165400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr10:6157600-6165400	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:6157600-6166200	Weak transcription	Brain Angular Gyrus	brain
50	chr10:6157600-6166200	Weak transcription	Brain Substantia Nigra	brain

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