Variant report

Variant	rs66524564
Chromosome Location	chr10:6165436-6165437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6164842..6170645-chr10:6170879..6175262,7	K562	blood:
2	chr10:6133090..6135580-chr10:6163939..6166361,2	K562	blood:
3	chr10:6155964..6160199-chr10:6162933..6165493,4	K562	blood:

Variant related genes	Relation type
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12241939	0.92[ASN][1000 genomes]
rs1544304	1.00[ASN][1000 genomes]
rs41295353	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41295373	0.92[ASN][1000 genomes]
rs73605992	0.92[ASN][1000 genomes]
rs73605996	0.92[ASN][1000 genomes]
rs8463	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6154400-6166400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:6157000-6166400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:6157000-6170800	Weak transcription	Gastric	stomach
4	chr10:6157600-6166200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:6157600-6166200	Weak transcription	Brain Substantia Nigra	brain
6	chr10:6157600-6166400	Weak transcription	Spleen	Spleen
7	chr10:6157600-6170400	Weak transcription	Lung	lung
8	chr10:6157600-6170400	Weak transcription	Thymus	Thymus
9	chr10:6157600-6171000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:6157600-6172000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:6157800-6170800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:6158200-6166400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:6158200-6168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:6158400-6169400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:6158600-6166600	Weak transcription	HUVEC	blood vessel
16	chr10:6158600-6166600	Weak transcription	K562	blood
17	chr10:6158600-6168000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:6158600-6170200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:6158600-6170200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:6159000-6170400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr10:6159000-6170800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:6159200-6165800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr10:6159200-6166200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:6159200-6166200	Weak transcription	Placenta	Placenta
25	chr10:6159200-6166400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:6159200-6166600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:6159200-6166600	Weak transcription	A549	lung
28	chr10:6159200-6166600	Weak transcription	NHDF-Ad	bronchial
29	chr10:6159200-6166600	Weak transcription	Osteobl	bone
30	chr10:6159200-6167200	Weak transcription	Primary B cells from cord blood	blood
31	chr10:6159200-6170400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:6159200-6170400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:6159200-6170400	Weak transcription	NH-A	brain
34	chr10:6159200-6170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:6159200-6170600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:6159200-6170600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:6159400-6165800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr10:6159400-6166600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:6159400-6166800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:6159400-6167000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:6159400-6170200	Weak transcription	Primary T cells from cord blood	blood
42	chr10:6159400-6172000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:6160000-6170200	Weak transcription	Fetal Thymus	thymus
44	chr10:6161800-6166600	Weak transcription	Brain Anterior Caudate	brain
45	chr10:6161800-6166600	Weak transcription	HMEC	breast
46	chr10:6161800-6170200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:6161800-6170400	Weak transcription	Left Ventricle	heart
48	chr10:6162000-6166600	Weak transcription	Fetal Heart	heart
49	chr10:6162200-6166600	Weak transcription	Right Atrium	heart
50	chr10:6162600-6170200	Weak transcription	Right Ventricle	heart

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