Variant report

Variant	rs41297895
Chromosome Location	chr11:120690618-120690619
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11218079	1.00[AFR][1000 genomes]
rs1320719	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120674000-120696000	Weak transcription	Fetal Lung	lung
2	chr11:120680200-120695000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:120684000-120707600	Weak transcription	Ovary	ovary
4	chr11:120688200-120699800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:120688400-120695200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:120688600-120698400	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:120690000-120691400	Enhancers	HepG2	liver
8	chr11:120690000-120691600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:120690200-120690800	Weak transcription	Fetal Brain Female	brain
10	chr11:120690200-120691400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:120690200-120691400	Enhancers	Brain Germinal Matrix	brain
12	chr11:120690400-120690800	Flanking Active TSS	Brain Anterior Caudate	brain
13	chr11:120690400-120691200	Enhancers	Adipose Nuclei	Adipose
14	chr11:120690600-120690800	Enhancers	Brain Cingulate Gyrus	brain
15	chr11:120690600-120691000	Enhancers	Fetal Brain Male	brain
16	chr11:120690600-120691600	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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