Variant report

Variant	rs1320719
Chromosome Location	chr11:120514577-120514578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs41297895	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120511400-120515600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:120511600-120514600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:120511800-120516200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:120512200-120514600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:120512400-120516600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:120512800-120537800	Weak transcription	Ovary	ovary
7	chr11:120513200-120514600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:120513200-120514600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:120513400-120514600	Weak transcription	Fetal Brain Male	brain
10	chr11:120513800-120516200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:120514000-120515000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:120514200-120514600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
13	chr11:120514200-120514600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr11:120514200-120516200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr11:120514400-120514600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:120514400-120514600	Enhancers	Brain Germinal Matrix	brain
17	chr11:120514400-120519800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:120514400-120543600	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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