Variant report

Variant	rs4131321
Chromosome Location	chr5:113536979-113536980
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4072690	0.85[AFR][1000 genomes]
rs4235753	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4460131	0.85[AFR][1000 genomes]
rs4484414	0.85[AFR][1000 genomes]
rs4558978	0.85[AFR][1000 genomes]
rs4705638	0.93[AFR][1000 genomes]
rs5013666	0.85[AFR][1000 genomes]
rs6594790	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6863368	0.87[AFR][1000 genomes]
rs6868140	0.93[AFR][1000 genomes]
rs6892162	0.87[AFR][1000 genomes]
rs6898378	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599432	chr5:113486177-113561766	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113536600-113537800	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links