Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10053242	0.88[JPT][hapmap]
rs3935351	0.82[ASN][1000 genomes]
rs4072690	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4076659	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4076660	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4131321	0.93[AFR][1000 genomes]
rs4235753	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4235755	0.82[ASN][1000 genomes]
rs4451040	0.82[ASN][1000 genomes]
rs4460131	0.91[AFR][1000 genomes]
rs4484414	0.91[AFR][1000 genomes]
rs4521461	0.82[ASN][1000 genomes]
rs4535442	0.82[ASN][1000 genomes]
rs4537054	0.82[ASN][1000 genomes]
rs4558978	0.91[AFR][1000 genomes]
rs4597957	0.88[JPT][hapmap]
rs4705637	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705638	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5013666	0.91[AFR][1000 genomes]
rs6594789	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6863368	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6890587	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6892162	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7722188	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599432	chr5:113486177-113561766	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv981026	chr5:113539925-113544652	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6868140	SRP19	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113540200-113541600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:113540600-113541000	Enhancers	Cortex derived primary cultured neurospheres	brain

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