Variant report

Variant	rs41314970
Chromosome Location	chr10:38240296-38240297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11817782	0.93[ASN][1000 genomes]
rs12098614	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41276136	0.83[EUR][1000 genomes]
rs7917989	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38220800-38241000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:38223400-38241000	Weak transcription	Brain Angular Gyrus	brain
3	chr10:38223600-38240600	Weak transcription	Aorta	Aorta
4	chr10:38227400-38241000	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:38227400-38241600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:38229400-38241000	Weak transcription	Fetal Brain Male	brain
7	chr10:38229600-38240600	Weak transcription	Right Ventricle	heart
8	chr10:38232400-38241000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:38232600-38240400	Weak transcription	Fetal Lung	lung
10	chr10:38233000-38241200	Weak transcription	Esophagus	oesophagus
11	chr10:38233200-38240400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:38233400-38241000	Weak transcription	Spleen	Spleen
13	chr10:38234000-38241600	Weak transcription	Small Intestine	intestine
14	chr10:38234200-38241000	Weak transcription	Thymus	Thymus
15	chr10:38234800-38241000	Weak transcription	Brain Germinal Matrix	brain
16	chr10:38235000-38240800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:38236000-38241000	Weak transcription	A549	lung
18	chr10:38236400-38241000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:38236400-38243800	Weak transcription	Fetal Stomach	stomach
20	chr10:38236800-38241000	Weak transcription	Gastric	stomach
21	chr10:38236800-38241200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:38236800-38241400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:38236800-38241600	Strong transcription	Stomach Smooth Muscle	stomach
24	chr10:38236800-38249000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:38237200-38241000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:38237200-38241000	Weak transcription	Osteobl	bone
27	chr10:38237400-38240600	Weak transcription	HSMM	muscle
28	chr10:38237400-38241000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:38237600-38240800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:38237800-38241200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:38237800-38247200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:38238000-38240600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:38238000-38240600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:38238000-38244200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:38238000-38248600	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:38238200-38240400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:38238200-38240600	Weak transcription	NHDF-Ad	bronchial
38	chr10:38238200-38240800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:38238200-38241000	Weak transcription	Fetal Intestine Large	intestine
40	chr10:38238200-38241000	Weak transcription	Pancreas	Pancrea
41	chr10:38238400-38240800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:38238400-38240800	Weak transcription	Primary B cells from cord blood	blood
43	chr10:38238400-38253000	Weak transcription	Fetal Intestine Small	intestine
44	chr10:38238600-38240400	Weak transcription	Ovary	ovary
45	chr10:38238600-38240800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:38238600-38240800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr10:38238600-38241200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr10:38238600-38246400	Strong transcription	Psoas Muscle	Psoas
49	chr10:38238800-38240400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr10:38238800-38241400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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