Variant report

Variant	rs7917989
Chromosome Location	chr10:38124261-38124262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:38114753..38117348-chr10:38123432..38125815,2	K562	blood:
2	chr10:38123769..38125348-chr10:38128323..38130587,2	MCF-7	breast:
3	chr10:38123782..38128970-chr10:38145175..38149505,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198105	Chromatin interaction
ENSG00000236514	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11817782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12098614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17591312	0.86[AFR][1000 genomes]
rs28528184	0.83[AFR][1000 genomes]
rs35404825	0.83[AFR][1000 genomes]
rs41276136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41314970	0.83[EUR][1000 genomes]
rs7088170	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38114000-38128800	ZNF genes & repeats	Liver	Liver
2	chr10:38114400-38125600	ZNF genes & repeats	Primary T cells from cord blood	blood
3	chr10:38114400-38125800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:38114400-38130000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr10:38115600-38129000	ZNF genes & repeats	A549	lung
6	chr10:38115600-38138200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:38115800-38132200	ZNF genes & repeats	Fetal Brain Female	brain
8	chr10:38116000-38128800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:38116200-38127600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr10:38116200-38137800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:38116400-38128400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr10:38116600-38135800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr10:38117200-38127400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chr10:38117200-38129600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:38117400-38129600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:38117400-38131600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr10:38117600-38128800	ZNF genes & repeats	Fetal Lung	lung
18	chr10:38117800-38124800	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:38118000-38125600	ZNF genes & repeats	GM12878-XiMat	blood
20	chr10:38120600-38126400	ZNF genes & repeats	Fetal Intestine Large	intestine
21	chr10:38121200-38124600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:38121200-38125200	Weak transcription	Pancreas	Pancrea
23	chr10:38121200-38125400	Weak transcription	Esophagus	oesophagus
24	chr10:38121200-38127000	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:38121200-38127400	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:38121200-38128200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:38121200-38131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:38121600-38124400	Weak transcription	Fetal Stomach	stomach
29	chr10:38121600-38124400	Weak transcription	Lung	lung
30	chr10:38121600-38125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:38121600-38125400	Weak transcription	Right Ventricle	heart
32	chr10:38121600-38125400	Weak transcription	Spleen	Spleen
33	chr10:38121600-38125600	Weak transcription	Thymus	Thymus
34	chr10:38121600-38127000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:38121600-38127600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:38121600-38127600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr10:38121600-38128200	Strong transcription	Brain Substantia Nigra	brain
38	chr10:38121800-38127400	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr10:38121800-38129400	Strong transcription	HSMM	muscle
40	chr10:38122000-38127000	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr10:38122200-38124400	Weak transcription	Colonic Mucosa	Colon
42	chr10:38122200-38125200	Weak transcription	NHLF	lung
43	chr10:38122200-38125600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:38122200-38128000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:38122200-38128600	Weak transcription	HUVEC	blood vessel
46	chr10:38122200-38134400	Weak transcription	Hela-S3	cervix
47	chr10:38122400-38125200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr10:38122400-38127200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:38122400-38127200	Strong transcription	Brain Hippocampus Middle	brain
50	chr10:38122600-38124400	Weak transcription	Fetal Muscle Leg	muscle

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