Variant report

Variant	rs41324148
Chromosome Location	chr6:126850939-126850940
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1856443	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34929677	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57255415	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57539450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57823858	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs581484	0.85[YRI][hapmap]
rs60375753	1.00[AMR][1000 genomes]
rs61069279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61360672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021636	chr6:126792916-127022489	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1026498	chr6:126812609-127397240	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126848400-126852600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:126848400-126853000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:126848400-126855200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:126848600-126853000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:126848600-126853200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:126848600-126855800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:126849000-126855600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:126849600-126851200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:126850600-126851800	Enhancers	Stomach Mucosa	stomach
10	chr6:126850800-126851000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:126850800-126851000	Enhancers	Colonic Mucosa	Colon
12	chr6:126850800-126851200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:126850800-126851200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:126850800-126851200	Enhancers	Fetal Brain Male	brain
15	chr6:126850800-126851400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:126850800-126853400	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:126850800-126854200	Enhancers	Fetal Intestine Large	intestine
18	chr6:126850800-126854200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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