Variant report

Variant	rs61069279
Chromosome Location	chr6:126806003-126806004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1856443	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34929677	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41324148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57255415	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57539450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57823858	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60375753	1.00[AMR][1000 genomes]
rs61360672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021636	chr6:126792916-127022489	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv970162	chr6:126801702-126819420	Weak transcription Enhancers	TF binding region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126804800-126807200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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