Variant report

Variant	rs41349845
Chromosome Location	chr4:78514949-78514950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1052563	0.92[CEU][hapmap];1.00[LWK][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11730731	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17002731	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1875266	0.92[CEU][hapmap];1.00[LWK][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41439345	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62304086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62304089	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62304092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62304095	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62304096	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62304097	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62304099	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6852489	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78508600-78515200	Weak transcription	Spleen	Spleen
2	chr4:78511800-78515200	Weak transcription	Right Atrium	heart
3	chr4:78512200-78515200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:78513800-78515200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:78513800-78516200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr4:78514000-78515600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:78514000-78515800	Enhancers	Fetal Heart	heart
8	chr4:78514200-78515000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr4:78514200-78515200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr4:78514200-78515600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:78514400-78515400	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:78514600-78515200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:78514800-78515200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:78514800-78515200	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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