Variant report

Variant	rs41360244
Chromosome Location	chr3:46234053-46234054
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13061548	0.81[AFR][1000 genomes]
rs13089907	0.81[AFR][1000 genomes]
rs13090848	0.81[AFR][1000 genomes]
rs17078681	0.84[AFR][1000 genomes]
rs17078691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17078693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34013035	0.81[AFR][1000 genomes]
rs34198655	0.81[AFR][1000 genomes]
rs34920132	0.80[AFR][1000 genomes]
rs35111399	0.96[AFR][1000 genomes]
rs41364446	0.83[AFR][1000 genomes]
rs41390044	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41416345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41446946	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4547740	0.84[AFR][1000 genomes]
rs56102061	0.84[AFR][1000 genomes]
rs57522944	0.84[AFR][1000 genomes]
rs58095302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59654809	0.82[AFR][1000 genomes]
rs61145486	0.82[AFR][1000 genomes]
rs6791732	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6792180	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830775	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830779	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46229800-46234800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:46230000-46234800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:46232400-46237000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:46233800-46234200	Enhancers	GM12878-XiMat	blood
5	chr3:46233800-46234600	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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