Variant report

Variant	rs41416345
Chromosome Location	chr3:46232803-46232804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17078681	0.82[AFR][1000 genomes]
rs17078691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17078693	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35111399	0.94[AFR][1000 genomes]
rs41360244	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41364446	0.82[AFR][1000 genomes]
rs41390044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41446946	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4547740	0.82[AFR][1000 genomes]
rs56102061	0.82[AFR][1000 genomes]
rs57522944	0.82[AFR][1000 genomes]
rs58095302	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59654809	0.81[AFR][1000 genomes]
rs6791732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6792180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830779	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830795	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46229600-46233200	Weak transcription	Spleen	Spleen
2	chr3:46229800-46233000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:46229800-46234800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:46230000-46234800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:46230200-46233200	Weak transcription	Primary B cells from cord blood	blood
6	chr3:46230600-46233000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:46232400-46237000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:46232800-46233400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:46232800-46233400	Enhancers	GM12878-XiMat	blood
10	chr3:46232800-46233800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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