Variant report

Variant	rs41368550
Chromosome Location	chr16:80694253-80694254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80690433..80692139-chr16:80693277..80695460,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10514504	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16953755	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16953756	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16953758	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16953773	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs1869191	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs41461644	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56969697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59138080	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59559356	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6564777	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.80[ASN][1000 genomes]
rs6564780	1.00[CHB][hapmap]
rs6564781	1.00[CHB][hapmap]
rs6564782	0.83[CHD][hapmap]
rs7186836	1.00[CHB][hapmap]
rs7190255	1.00[CHB][hapmap]
rs7191647	1.00[CHB][hapmap]
rs7195009	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7203749	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7204905	0.83[CHD][hapmap]
rs8046128	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9926868	0.83[CHD][hapmap]
rs9928210	1.00[CHB][hapmap]
rs9933370	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1058764	chr16:80656966-80707848	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80674400-80707600	Weak transcription	Placenta	Placenta
2	chr16:80687000-80716200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:80689000-80751000	Weak transcription	Pancreas	Pancrea
4	chr16:80689800-80700200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:80690000-80694600	Weak transcription	Hela-S3	cervix
6	chr16:80690600-80728000	Weak transcription	Gastric	stomach
7	chr16:80690800-80703200	Weak transcription	Esophagus	oesophagus
8	chr16:80691000-80704400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr16:80694000-80698600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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