Variant report

Variant	rs56969697
Chromosome Location	chr16:80692327-80692328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10514504	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16953755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16953756	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16953758	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16953773	1.00[AMR][1000 genomes]
rs1869191	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41368550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs41461644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59138080	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59559356	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6564777	0.85[ASN][1000 genomes]
rs7195009	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7203749	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8046128	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1058764	chr16:80656966-80707848	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80674400-80707600	Weak transcription	Placenta	Placenta
2	chr16:80687000-80716200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:80687200-80692400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr16:80688200-80692800	Weak transcription	Aorta	Aorta
5	chr16:80689000-80751000	Weak transcription	Pancreas	Pancrea
6	chr16:80689800-80700200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:80690000-80694600	Weak transcription	Hela-S3	cervix
8	chr16:80690600-80728000	Weak transcription	Gastric	stomach
9	chr16:80690800-80703200	Weak transcription	Esophagus	oesophagus
10	chr16:80691000-80704400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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