Variant report

Variant	rs41370044
Chromosome Location	chr16:31289127-31289128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11574632	1.00[ASN][1000 genomes]
rs11574635	1.00[ASN][1000 genomes]
rs12920910	1.00[ASN][1000 genomes]
rs13336235	1.00[ASN][1000 genomes]
rs58200984	1.00[ASN][1000 genomes]
rs58352473	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58656594	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58827327	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62051462	1.00[ASN][1000 genomes]
rs62051470	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62051472	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62051481	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62051523	1.00[ASN][1000 genomes]
rs62054769	1.00[ASN][1000 genomes]
rs72791981	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8060163	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31277400-31290000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr16:31277600-31290400	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr16:31277600-31290400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr16:31277600-31290600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr16:31279600-31290400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr16:31281400-31289200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr16:31282200-31290000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr16:31284000-31291200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr16:31285400-31289400	Weak transcription	Pancreas	Pancrea
10	chr16:31285400-31292000	Weak transcription	Esophagus	oesophagus
11	chr16:31286800-31290800	Weak transcription	Liver	Liver
12	chr16:31287000-31289200	Weak transcription	Adipose Nuclei	Adipose
13	chr16:31287200-31289200	Weak transcription	Lung	lung
14	chr16:31287400-31289200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr16:31287400-31289600	Weak transcription	Primary B cells from cord blood	blood
16	chr16:31287600-31289200	Weak transcription	Spleen	Spleen
17	chr16:31288600-31289200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links